Kutlu Ö. Ülgen

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 4

Top Topics

Virtual Screening

Blind Equalization

Chemical Structures

Top Venues

Comput. Biol. Chem.

Publications

Enes Fahri Tezcan, Yigit Demirtas, Zeynep Petek Cakar, Kutlu Ö. Ülgen
Comprehensive genome-scale metabolic model of the human pathogen Cryptococcus neoformans: A platform for understanding pathogen metabolism and identifying new drug targets. Frontiers Bioinform. 3 (2023)
Gökçe Uludogan, Elif Özkirimli, Kutlu Ö. Ülgen, Nilgün Karali, Arzucan Özgür
Exploiting Pretrained Biochemical Language Models for Targeted Drug Design. CoRR (2022)
Merve Gorkem Durmaz, Abdurrahman Dilmac, Berk Camli, Elif Gencturk, Zeliha Cansu Canbek Ozdil, Ali Emre Pusane, Arda Deniz Yalcinkaya, Kutlu Ö. Ülgen, Tuna Tugcu
Preliminary Studies on Flow Assisted Propagation of Fluorescent Microbeads in Microfluidic Channels for Molecular Communication Systems. BICT (2020)
Ozge Bayraktar, Elif Ozkirimli Olmez, Kutlu Ö. Ülgen
Sphingosine kinase 1 (SK1) allosteric inhibitors that target the dimerization site. Comput. Biol. Chem. 69 (2017)
Utku Deniz, Kutlu Ö. Ülgen, Elif Ozkirimli Olmez
Identification of potential Tpx inhibitors against pathogen-host interactions. Comput. Biol. Chem. 58 (2015)
Oya Gursoy Yilmaz, Elif Ozkirimli Olmez, Kutlu Ö. Ülgen
Targeting the Akt1 allosteric site to identify novel scaffolds through virtual screening. Comput. Biol. Chem. 48 (2014)
Saliha Durmus Tekir, Tunahan Çakir, Emre Ardiç, Ali Semih Sayilirbas, Gökhan Konuk, Mithat Konuk, Hasret Sariyer, Azat Ugurlu, Ilknur Karadeniz, Arzucan Özgür, Fatih Erdogan Sevilgen, Kutlu Ö. Ülgen
PHISTO: pathogen-host interaction search tool. Bioinform. 29 (10) (2013)
Aysun Eren Toku, Saliha Durmus Tekir, Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen
Reconstruction and crosstalk of protein-protein interaction networks of Wnt and Hedgehog signaling in Drosophila melanogaster. Comput. Biol. Chem. 35 (5) (2011)
Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen
Stoichiometric network reconstruction and analysis of yeast sphingolipid metabolism incorporating different states of hydroxylation. Biosyst. 104 (1) (2011)
Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen
Drug target identification in sphingolipid metabolism by computational systems biology tools: Metabolic control analysis and metabolic pathway analysis. J. Biomed. Informatics 43 (4) (2010)
Saliha Durmus Tekir, Kazim Yalçin Arga, Kutlu Ö. Ülgen
Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network. J. Biomed. Informatics 42 (2) (2009)
Tunahan Çakir, Betül Kirdar, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Jens Nielsen
Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae. BMC Syst. Biol. 1 (2007)
Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Stephen G. Oliver
Integrative investigation of metabolic and transcriptomic data. BMC Bioinform. 7 (2006)
Saliha Durmus Tekir, Tunahan Çakir, Kutlu Ö. Ülgen
Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches. Comput. Biol. Chem. 30 (5) (2006)
S. Tiveci, Ata Akin, Tunahan Çakir, H. Saybasili, Kutlu Ö. Ülgen
Modelling of calcium dynamics in brain energy metabolism and Alzheimer's disease. Comput. Biol. Chem. 29 (2) (2005)