Ewy A. Mathé

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 18

Top Topics

Gene Expression

International Conference

Regulatory Elements

Computational Methods

Top Venues

Nucleic Acids Res.

BMC Medical Informatics Decis. Mak.

Publications

Jaleal Sanjak, Jessica Binder, Arjun Singh Yadaw, Qian Zhu, Ewy A. Mathé
Clustering rare diseases within an ontology-enriched knowledge graph. J. Am. Medical Informatics Assoc. 31 (1) (2023)
Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A. Mathé, Tudor I. Oprea
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic Acids Res. 51 (D1) (2023)
Jeremy Parker Yang, Devon Leadman, Richard M. Ballew, Eric Sid, Yanji Xu, Ewy A. Mathé, Qian Zhu
User Centered Rare Disease Clinical Trial Knowledge Graph (RCTKG). MedInfo (2023)
Qian Zhu, Chunxu Qu, Ruizheng Liu, Gunjan Vatas, Andrew Clough, Ðac-Trung Nguyen, Eric Sid, Ewy A. Mathé, Yanji Xu
Rare disease-based scientific annotation knowledge graph. Frontiers Artif. Intell. 5 (2022)
Vishal B. Siramshetty, Ivan Grishagin, Ðac-Trung Nguyen, Tyler Peryea, Yulia Skovpen, Oleg Stroganov, Daniel Katzel, Timothy Sheils, Ajit Jadhav, Ewy A. Mathé, Noel Southall
NCATS Inxight Drugs: a comprehensive and curated portal for translational research. Nucleic Acids Res. 50 (D1) (2022)
Gergely Zahoránszky-Köhalmi, Vishal B. Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A. Mathé, Matthew D. Hall, Samuel G. Michael, Alexander G. Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I. Oprea
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research. J. Chem. Inf. Model. 62 (3) (2022)
Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A. Mathé, Anton Simeonov, Tudor I. Oprea
TCRD and Pharos 2021: mining the human proteome for disease biology. Nucleic Acids Res. 49 (Database-Issue) (2021)
Tara Eicher, Jany Chan, Han Luu, Raghu Machiraju, Ewy A. Mathé
Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements. BMC Bioinform. 22 (1) (2021)
Zhaoqian Liu, Anjun Ma, Ewy A. Mathé, Marlena Merling, Qin Ma, Bingqiang Liu
Network analyses in microbiome based on high-throughput multi-omics data. Briefings Bioinform. 22 (2) (2021)
Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A. Mathé, Lai Wei, Kai Wang
Correction to: The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases. BMC Bioinform. 21 (1) (2020)
Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A. Mathé
Correction to: The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions. BMC Medical Informatics Decis. Mak. 20 (1) (2020)
Xia Ning, Chi Zhang, Kai Wang, Zhongming Zhao, Ewy A. Mathé
The International Conference on Intelligent Biology and Medicine 2019: computational methods for drug interactions. BMC Medical Informatics Decis. Mak. (2) (2020)
Zhongming Zhao, Yulin Dai, Chi Zhang, Ewy A. Mathé, Lai Wei, Kai Wang
The International Conference on Intelligent Biology and Medicine (ICIBM) 2019: bioinformatics methods and applications for human diseases. BMC Bioinform. (24) (2019)
Tara Eicher, Andrew Patt, Esko Kautto, Raghu Machiraju, Ewy A. Mathé, Yan Zhang
Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge. BMC Bioinform. (24) (2019)
Jalal K. Siddiqui, Elizabeth Baskin, Mingrui Liu, Carmen Z. Cantemir-Stone, Bofei Zhang, Russell Bonneville, Joseph P. McElroy, Kevin R. Coombes, Ewy A. Mathé
IntLIM: integration using linear models of metabolomics and gene expression data. BMC Bioinform. 19 (1) (2018)
Ewy A. Mathé, Ben Busby, Helen Piontkivska, Team of Developers
Matchmaking in Bioinformatics. F1000Research 7 (2018)
Elizabeth Baskin, Rick Farouni, Ewy A. Mathé
ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data. Bioinform. 33 (5) (2017)
Elizabeth Baskin, Rick Farouni, Ewy A. Mathé
ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data. Bioinform. 33 (16) (2017)
Majid Masso, Ewy A. Mathé, Nida Parvez, Kahkeshan Hijazi, Iosif I. Vaisman
Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein. BIBM (2008)