Ben Busby

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 16

Top Topics

Learning Environment

Top Venues

Publications

Thomas Krannich, Marina Herrera Sarrias, Hiba Ben Aribi, Moustafa Shokrof, Alfredo Iacoangeli, Ammar Al-Chalabi, Fritz J. Sedlazeck, Ben Busby, Ahmad Al Khleifat
VariantSurvival: a tool to identify genotype-treatment response. Frontiers Bioinform. 3 (2023)
Matthew N. Bernstein, Ariella L. Gladstein, Khun Zaw Latt, Emily Clough, Ben Busby, Allissa Dillman
Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive. F1000Research 9 (2020)
Thomas L. Madden, Ben Busby, Jian Ye
Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows. Bioinform. 35 (15) (2019)
Grzegorz M. Boratyn, Jean Thierry-Mieg, Danielle Thierry-Mieg, Ben Busby, Thomas L. Madden
Magic-BLAST, an accurate RNA-seq aligner for long and short reads. BMC Bioinform. 20 (1) (2019)
Gloria C. Ferreira, Jenna Oberstaller, Renée Fonseca, Thomas E. Keller, Swamy Rakesh Adapa, Justin Gibbons, Chengqi Wang, Xiaoming Liu, Chang Li, Minh Pham, Guy W. Dayhoff II, Linh M. Duong, Luis Tañón Reyes, Luciano Enrique Laratelli, Douglas Franz, Segun Fatumo, ATM Golam Bari, Audrey Freischel, Lindsey Fiedler, Omkar Dokur, Krishna Sharma, Deborah Cragun, Ben Busby, Rays H. Y. Jiang
Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich's ataxia, and other rare iron-related diseases. F1000Research 8 (2019)
Evan Biederstedt, Jeffrey C. Oliver, Nancy F. Hansen, Aarti Jajoo, Nathan A. Dunn, Andrew Olson, Ben Busby, Alexander T. Dilthey
assemblies. F1000Research 7 (2018)
Ewy A. Mathé, Ben Busby, Helen Piontkivska, Team of Developers
Matchmaking in Bioinformatics. F1000Research 7 (2018)
Igor Dolgalev, Fritz J. Sedlazeck, Ben Busby
DangerTrack: A scoring system to detect difficult-to-assess regions. F1000Research 6 (2017)
Kishore R. Anekalla, J. P. Courneya, Nicolas Fiorini, Jake Lever, Michael Muchow, Ben Busby
PubRunner: A light-weight framework for updating text mining results. F1000Research 6 (2017)
Eric M. Weitz, Lorena Pantano, Jingzhi Zhu, Bennett Upton, Ben Busby
Viewing RNA-seq data on the entire human genome. F1000Research 6 (2017)
Erin K. Wagner, Satyajeet Raje, Liz Amos, Jessica Kurata, Abhijit Badve, Yingquan Li, Ben Busby
Extending TCGA queries to automatically identify analogous genomic data from dbGaP. F1000Research 6 (2017)
Liz Amos, Satyajeet Raje, Masato Kimura, Preeti G. Kochar, Victoria Wilder, Ben Busby
Harmonizing User-defined Phenotypic Variables using Latent Semantic Analysis (LSA) to Improve Data Discoverability in dbGaP. AMIA (2017)
Satyajeet Raje, Ravi Teja Bhupatiraju, Abdelrahman Hosny, Ben Busby
MeSHgram: An Open Source Tool to Visually Browse Co-occurrence of MeSH Terms in PubMed. AMIA (2017)
Eric Moyer, Megan Hagenauer, Matthew Lesko, Felix Francis, Oscar Rodriguez, Vijayaraj Nagarajan, Vojtech Huser, Ben Busby
MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis. F1000Research 5 (2016)
Elizabeth Baskin, Peter De-Ford, Allison F. Dennis, Ian Misner, Frederick J. Tan, Ben Busby
A cloud-based learning environment for comparing RNA-seq aligners. F1000Research 5 (2016)
Ben Busby, Matthew Lesko, Lisa Federer
Closing gaps between open software and public data in a hackathon setting: User-centered software prototyping. F1000Research 5 (2016)