Raghu Machiraju

ORCID

Publication Activity (10 Years)

Years Active: 1993-2024
Publications (10 Years): 30

Top Venues

Publications

Dhabaleswar K. Panda, Vipin Chaudhary, Eric Fosler-Lussier, Raghu Machiraju, Amit Majumdar, Beth Plale, Rajiv Ramnath, Ponnuswamy Sadayappan, Neelima Savardekar, Karen Tomko
Creating intelligent cyberinfrastructure for democratizing AI. AI Mag. 45 (1) (2024)
Grigorios M. Karageorgos, Sanghee Cho, Elizabeth McDonough, Chrystal Chadwick, Soumya Ghose, Jonathan Owens, Kyeong Joo Jung, Raghu Machiraju, Robert West, James D. Brooks, Parag Mallick, Fiona Ginty
Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images. Frontiers Bioinform. 3 (2023)
Asmaa Aljuhani, Ishya Casukhela, Jany Chan, David Liebner, Raghu Machiraju
Uncertainty Aware Sampling Framework of Weak-Label Learning for Histology Image Classification. MICCAI (2) (2022)
Apan Qasem, Hartwig Anzt, Eduard Ayguadé, Katharine Cahill, Ramon Canal, Jany Chan, Eric Fosler-Lussier, Fritz Göbel, Arpan Jain, Marcel Koch, Mateusz Kuzak, Josep Llosa, Raghu Machiraju, Xavier Martorell, Pratik Nayak, Shameema Oottikkal, Marcin Ostasz, Dhabaleswar K. Panda, Dirk Pleiter, Rajiv Ramnath, Maria-Ribera Sancho, Alessio Sclocco, Aamir Shafi, Hanno Spreeuw, Hari Subramoni, Karen Tomko
Lightning Talks of EduHPC 2022. EduHPC@SC (2022)
Vishal Dey, Raghu Machiraju, Xia Ning
Improving Compound Activity Classification via Deep Transfer and Representation Learning. CoRR (2021)
Chaitanya Kulkarni, Jany Chan, Eric Fosler-Lussier, Raghu Machiraju
Learning Latent Structures for Cross Action Phrase Relations in Wet Lab Protocols. ACL/IJCNLP (1) (2021)
Tara Eicher, Jany Chan, Han Luu, Raghu Machiraju, Ewy A. Mathé
Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements. BMC Bioinform. 22 (1) (2021)
Arunima Srivastava, Michael Sharpnack, Kun Huang, Parag Mallick, Raghu Machiraju
PTR Explorer: An approach to identify and explore Post Transcriptional Regulatory mechanisms usingproteogenomics. PSB (2020)
Arpan Jain, Ammar Ahmad Awan, Asmaa M. Aljuhani, Jahanzeb Maqbool Hashmi, Quentin G. Anthony, Hari Subramoni, Dhabaleswar K. Panda, Raghu Machiraju, Anil Parwani
GEMS: GPU-enabled memory-aware model-parallelism system for distributed DNN training. SC (2020)
Sundaresan Raman, Shantanu Singh, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju
Capturing variations in nuclear phenotypes. J. Comput. Sci. 36 (2019)
Arunima Srivastava, Ravali Adusumilli, Hunter Boyce, Daniel Garijo, Varun Ratnakar, Rajiv Mayani, Thomas Yu, Raghu Machiraju, Yolanda Gil, Parag Mallick
Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility. PSB (2019)
Morgan E. Rodgers, Eric Franz, Alan Chalker, David E. Hudak, Christopher Stewart, Raghu Machiraju, Steve Chang, Cathie Smith
Data Commons to Support University-Wide Cross Discipline Research. PEARC (2019)
Hao Ding, Michael Sharpnack, Chao Wang, Kun Huang, Raghu Machiraju
Integrative cancer patient stratification via subspace merging. Bioinform. 35 (10) (2019)
Xiaonan Ji, Han-Wei Shen, Alan Ritter, Raghu Machiraju, Po-Yin Yen
Visual Exploration of Neural Document Embedding in Information Retrieval: Semantics and Feature Selection. IEEE Trans. Vis. Comput. Graph. 25 (6) (2019)
Tara Eicher, Andrew Patt, Esko Kautto, Raghu Machiraju, Ewy A. Mathé, Yan Zhang
Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge. BMC Bioinform. (24) (2019)
Raghu Machiraju, Jens Rittscher, Motonori Ota
Workshop on Patient Similitude: Combining Histopathological Images & Multiple-Scale Molecular Phenotypes (NII Shonan Meeting 2018-17). NII Shonan Meet. Rep. 2018 (2018)
Chaitanya Kulkarni, Wei Xu, Alan Ritter, Raghu Machiraju
An Annotated Corpus for Machine Reading of Instructions in Wet Lab Protocols. NAACL-HLT (2) (2018)
Chaitanya Kulkarni, Wei Xu, Alan Ritter, Raghu Machiraju
An Annotated Corpus for Machine Reading of Instructions in Wet Lab Protocols. CoRR (2018)
Xing Tang, Arunima Srivastava, Huayang Liu, Raghu Machiraju, Kun Huang, Gustavo Leone
annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq. Bioinform. 34 (16) (2018)
Arunima Srivastava, Chaitanya Kulkarni, Parag Mallick, Kun Huang, Raghu Machiraju
Building trans-omics evidence: using imaging and 'omics' to characterize cancer profiles. PSB (2018)
Xing Tang, Arunima Srivastava, Huayang Liu, Raghu Machiraju, Kun Huang, Gustavo Leone
annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq. Bioinform. 33 (10) (2017)
Pacharmon Kaewprag, Cheryl Newton, Brenda Vermillion, Sookyung Hyun, Kun Huang, Raghu Machiraju
Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks. BMC Medical Informatics Decis. Mak. 17 (2) (2017)
Xiaonan Ji, Raghu Machiraju, Alan Ritter, Po-Yin Yen
Visualizing Article Similarities via Sparsified Article Network and Map Projection for Systematic Reviews. MedInfo (2017)
Qihang Li, Kun Huang, Raghu Machiraju
Spatiotemporal Visualization of Gene Expression in the Developing Mouse Brain. EuroVis (Short Papers) (2017)
Jie Wang, Shuli Xia, Brian Arand, Heng Zhu, Raghu Machiraju, Kun Huang, Hongkai Ji, Jiang Qian
Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes. PLoS Comput. Biol. 12 (4) (2016)
Nan Meng, Raghu Machiraju, Kun Huang
Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types. BMC Bioinform. 17 (S-17) (2016)
Ayan Biswas, David S. Thompson, Wenbin He, Qi Deng, Chun-Ming Chen, Han-Wei Shen, Raghu Machiraju, Anand Rangarajan
An uncertainty-driven approach to vortex analysis using oracle consensus and spatial proximity. PacificVis (2015)
Hao Ding, Chao Wang, Kun Huang, Raghu Machiraju
GRAPHIE: graph based histology image explorer. BMC Bioinform. 16 (S11) (2015)
Nan Meng, Raghu Machiraju, Kun Huang
Identify Critical Genes in Development with Consistent H3K4me2 Patterns across Multiple Tissues. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (5) (2015)
Xiaonan Ji, Raghu Machiraju, Alan Ritter, Po-Yin Yen
Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews. AMIA (2015)
A. Yates, Amy Webb, Michael Sharpnack, H. Chamberlin, Kun Huang, Raghu Machiraju
Visualizing Multidimensional Data with Glyph SPLOMs. Comput. Graph. Forum 33 (3) (2014)
Raghu Machiraju
Fixing the Mercator Projection for the Internet Age. Computer 47 (1) (2014)
Raghu Machiraju, Carsten Görg, Arthur J. Olson
Visual Analytics for Biological Data. IEEE Computer Graphics and Applications 34 (2) (2014)
Hao Ding, Chao Wang, Kun Huang, Raghu Machiraju
iGPSe: A visual analytic system for integrative genomic based cancer patient stratification. BMC Bioinform. 15 (2014)
Qihang Li, Gabriel Zachmann, David Feng, Kun Huang, Raghu Machiraju
2013 IEEE Scientific Visualization Contest Winner: Observing Genomics and Phenotypical Patterns in the Developing Mouse Brain. IEEE Computer Graphics and Applications 34 (5) (2014)
L. Zhang, Qi Deng, Raghu Machiraju, Anand Rangarajan, David S. Thompson, D. Keith Walters, Han-Wei Shen
Boosting Techniques for Physics-Based Vortex Detection. Comput. Graph. Forum 33 (1) (2014)
Hao Ding, Chao Wang, Kun Huang, Raghu Machiraju
iGPSe: A Visual Analytic System for Integrative Genomic Based Cancer Patient Stratification. CoRR (2014)
Vikram Kalluru, Raghu Machiraju, Kun Huang
Identify condition-specific gene co-expression networks. Int. J. Comput. Biol. Drug Des. 6 (1/2) (2013)
Chao Wang, Thierry Pécot, Debra L. Zynger, Raghu Machiraju, Charles L. Shapiro, Kun Huang
Research and applications: Identifying survival associated morphological features of triple negative breast cancer using multiple datasets. J. Am. Medical Informatics Assoc. 20 (4) (2013)
Li Zhang, Raghu Machiraju, David S. Thompson
CAVIAR-Based Vortex Core Region Detection. CAD/Graphics (2013)
Do Young Park, Desiree Jones, Nicanor I. Moldovan, Raghu Machiraju, Thierry Pécot
Robust detection and visualization of cytoskeletal structures in fibrillar scaffolds from 3-dimensional confocal image. BioVis (2013)
Zhi Han, Lu Tian, Thierry Pécot, Tim Hui-Ming Huang, Raghu Machiraju, Kun Huang
A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data. BMC Bioinform. 13 (S-2) (2012)
Thierry Pécot, Shantanu Singh, Enrico Caserta, Kun Huang, Raghu Machiraju, Gustavo Leone
Non parametric cell nuclei segmentation based on a tracking over depth from 3D fluorescence confocal images. ISBI (2012)
M. Okan Irfanoglu, Lindsay Walker, Steffen Sammet, Carlo Pierpaoli, Raghu Machiraju
Susceptibility Distortion Correction for Echo Planar Images with Non-uniform B-Spline Grid Sampling: A Diffusion Tensor Image Study. MICCAI (2) (2011)
Firdaus Janoos, Shantanu Singh, Raghu Machiraju, William M. Wells III, István Ákos Mórocz
State-Space Models of Mental Processes from fMRI. IPMI (2011)
Frank van Ham, Raghu Machiraju, Klaus Mueller, Gerik Scheuermann, Chris Weaver
Message from the Paper Chairs and Guest Editors. IEEE Trans. Vis. Comput. Graph. 17 (12) (2011)
Shantanu Singh, Firdaus Janoos, Thierry Pécot, Enrico Caserta, Gustavo Leone, Jens Rittscher, Raghu Machiraju
Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning. IPMI (2011)
Shantanu Singh, Firdaus Janoos, Thierry Pécot, Enrico Caserta, Kun Huang, Jens Rittscher, Gustavo Leone, Raghu Machiraju
Non-parametric Population Analysis of Cellular Phenotypes. MICCAI (2) (2011)
Firdaus Janoos, Raghu Machiraju, Shantanu Singh, István Ákos Mórocz
Spatio-temporal models of mental processes from fMRI. NeuroImage 57 (2) (2011)
Firdaus Janoos, Raghu Machiraju, Steffen Sammet, Michael V. Knopp, Simon K. Warfield, István Ákos Mórocz
Measuring effects of latency in brain activity with FMRI. ISBI (2010)
Lee A. D. Cooper, Joel H. Saltz, Raghu Machiraju, Kun Huang
Two-point correlation as a feature for histology images: Feature space structure and correlation updating. CVPR Workshops (2010)
Hans-Christian Hege, David H. Laidlaw, Raghu Machiraju
Guest Editors' Introduction: Special Section on Volume Graphics and Point-Based Graphics. IEEE Trans. Vis. Comput. Graph. 16 (4) (2010)
Kishore Mosaliganti, Firdaus Janoos, Arnaud Gelas, Ramil Noche, Nikolaus Obholzer, Raghu Machiraju, Sean Megason
Anisotropic plate diffusion filtering for detection of cell membranes in 3D microscopy images. ISBI (2010)
Jean-Daniel Fekete, Frank van Ham, Raghu Machiraju, Torsten Möller, Hanspeter Pfister
Preface. IEEE Trans. Vis. Comput. Graph. 16 (6) (2010)
Shantanu Singh, Sundaresan Raman, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Jens Rittscher, Raghu Machiraju
Analysis of spatial variation of nuclear morphology in tissue microenvironments. ISBI (2010)
Firdaus Janoos, Raghu Machiraju, Steffen Sammet, Michael V. Knopp, István Ákos Mórocz
Unsupervised Learning of Brain States from fMRI Data. MICCAI (2) (2010)
Firdaus Janoos, Boonthanome Nouanesengsy, Raghu Machiraju, Han-Wei Shen, Steffen Sammet, Michael V. Knopp, István Ákos Mórocz
Visual Analysis of Brain Activity from fMRI Data. Comput. Graph. Forum 28 (3) (2009)
M. Okan Irfanoglu, Cheng Guan Koay, Sinisa Pajevic, Raghu Machiraju, Peter J. Basser
Diffusion Tensor Field Registration in the Presence of Uncertainty. MICCAI (1) (2009)
Firdaus Janoos, Kishore Mosaliganti, Xiaoyin Xu, Raghu Machiraju, Kun Huang, Stephen T. C. Wong
Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging. Medical Image Anal. 13 (1) (2009)
Kishore Mosaliganti, Firdaus Janoos, M. Okan Irfanoglu, Randall Ridgway, Raghu Machiraju, Kun Huang, Joel H. Saltz, Gustavo Leone, Michael C. Ostrowski
Tensor classification of N-point correlation function features for histology tissue segmentation. Medical Image Anal. 13 (1) (2009)
Bela Soni, David S. Thompson, Raghu Machiraju
Visualizing Particle/Flow Structure Interactions in the Small Bronchial Tubes. IEEE Trans. Vis. Comput. Graph. 14 (6) (2008)
Kishore Mosaliganti, Raghu Machiraju, Kun Huang, Gustavo Leone
Geometry-driven Visualization of Microscopic Structures in Biology. Comput. Graph. Forum 27 (3) (2008)
Shantanu Singh, Kishore Mosaliganti, Raghu Machiraju
Microstructure preserving synthesis of biomedical images. ISBI (2008)
Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee A. D. Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang
An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. J. Biomed. Informatics 41 (6) (2008)
Kishore Mosaliganti, Lee A. D. Cooper, Richard Sharp, Raghu Machiraju, Gustavo Leone, Kun Huang, Joel H. Saltz
Reconstruction of Cellular Biological Structures from Optical Microscopy Data. IEEE Trans. Vis. Comput. Graph. 14 (4) (2008)
M. Okan Irfanoglu, Raghu Machiraju, Steffen Sammet, Carlo Pierpaoli, Michael V. Knopp
Automatic Deformable Diffusion Tensor Registration for Fiber Population Analysis. MICCAI (2) (2008)
Firdaus Janoos, Boonthanome Nouanesengsy, Xiaoyin Xu, Raghu Machiraju, Stephen T. C. Wong
Classification and Uncertainty Visualization of Dendritic Spines from Optical Microscopy Imaging. Comput. Graph. Forum 27 (3) (2008)
Kishore Mosaliganti, Raghu Machiraju, Kun Huang
Geometry-driven visualization of microscopic structures in biology. ISBI (2008)
Richard Sharp, Randall Ridgway, Kishore Mosaliganti, Pamela Wenzel, Tony Pan, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz
Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data. Comput. Sci. Eng. 9 (1) (2007)
Alan T. Murray, Kamyoung Kim, James W. Davis, Raghu Machiraju, Richard E. Parent
Coverage optimization to support security monitoring. Comput. Environ. Urban Syst. 31 (2) (2007)
Kishore Mosaliganti, Firdaus Janoos, Richard Sharp, Randall Ridgway, Raghu Machiraju, Kun Huang, Pamela Wenzel, Alain de Bruin, Gustavo Leone, Joel H. Saltz
Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies. IEEE Trans. Medical Imaging 26 (9) (2007)
Richard Sharp, Jacob Adams, Raghu Machiraju, Robert Lee, Robert Crane
Physics-Based Subsurface Visualization of Human Tissue. IEEE Trans. Vis. Comput. Graph. 13 (3) (2007)
Firdaus Janoos, M. Okan Irfanoglu, Kishore Mosaliganti, Raghu Machiraju, Kun Huang, Pamela Wenzel, Alain de Bruin, Gustavo Leone
Multi-Resolution Image Segmentation Using the 2-Point Correlation Functions. ISBI (2007)
Mario Botsch, Baoquan Chen, Raghu Machiraju, Torsten Möller
Special section on the joint Symposium on Point-based Graphics and Volume Graphics 2006. Comput. Graph. 31 (2) (2007)
Firdaus Janoos, Shantanu Singh, M. Okan Irfanoglu, Raghu Machiraju, Richard E. Parent
Activity Analysis Using Spatio-Temporal Trajectory Volumes in Surveillance Applications. IEEE VAST (2007)
Bryan Mehta, Srinivasan Parthasarathy, Raghu Machiraju
Visual Exploration of Spatio-temporal Relationships for Scientific Data. IEEE VAST (2006)
Sameep Mehta, Srinivasan Parthasarathy, Raghu Machiraju
On Trajectory Representation for Scientific Features. ICDM (2006)
Monika Jankun-Kelly, Ming Jiang, David S. Thompson, Raghu Machiraju
Vortex Visualization for Practical Engineering Applications. IEEE Trans. Vis. Comput. Graph. 12 (5) (2006)
Kishore Mosaliganti, Guang Jia, Johannes T. Heverhagen, Raghu Machiraju, Joel H. Saltz, Michael V. Knopp
Preventing Signal Degradation During Elastic Matching of Noisy DCE-MR Eye Images. MICCAI (1) (2006)
Richard Sharp, Raghu Machiraju
Accelerating subsurface scattering using Cholesky factorization. Vis. Comput. 22 (8) (2006)
Kishore Mosaliganti, Tony Pan, Richard Sharp, Randall Ridgway, Srivathsan Iyengar, Alexandra Gulacy, Pamela Wenzel, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz
Registration and 3D visualization of large microscopy images. Medical Imaging: Image Processing (2006)
Yootai Kim, Raghu Machiraju, David S. Thompson
Path-based control of smoke simulations. Symposium on Computer Animation (2006)
Jinho Lee, Baback Moghaddam, Hanspeter Pfister, Raghu Machiraju
A Bilinear Illumination Model for Robust Face Recognition. ICCV (2005)
Jinho Lee, Lance C. Burton, Raghu Machiraju, Donna S. Reese
Efficient rendering of multiblock curvilinear grids with complex boundaries. Comput. Animat. Virtual Worlds 16 (1) (2005)
Gheorghe Craciun, Ming Jiang, David S. Thompson, Raghu Machiraju
Spatial Domain Wavelet Design for Feature Preservation in Computational Data Sets. IEEE Trans. Vis. Comput. Graph. 11 (2) (2005)
Jinho Lee, Hanspeter Pfister, Baback Moghaddam, Raghu Machiraju
Estimation of 3D Faces and Illumination from Single Photographs Using A Bilinear Illumination Model. Rendering Techniques (2005)
Richard Sharp, Raghu Machiraju
A Simplified Model for Inhomogeneous Subsurface Scattering. VG (2005)
Yisheng Chen, Jinho Lee, Richard E. Parent, Raghu Machiraju
Markerless monocular motion capture using image features and physical constraints. Computer Graphics International (2005)
Sameep Mehta, Steve Barr, Tat-Sang Choy, Hui Yang, Srinivasan Parthasarathy, Raghu Machiraju, John Wilkins
Dynamic Classification of Defect Structures in Molecular Dynamics Simulation Data. SDM (2005)
Leonid Glimcher, Gagan Agrawal, Sameep Mehta, Ruoming Jin, Raghu Machiraju
Parallelizing a Defect Detection and Categorization Application. IPDPS (2005)
Yootai Kim, Raghu Machiraju, David S. Thompson
Rough Interface Reconstruction Using the Level Set Method. IEEE Visualization (2004)
Jinho Lee, Baback Moghaddam, Hanspeter Pfister, Raghu Machiraju
Finding Optimal Views for 3D Face Shape Modeling. FGR (2004)
David S. Thompson, Srinivasan Parthasarathy, Raghu Machiraju, Scott Lawrence
Improvements to Response-Surface Based Vehicle Design Using a Feature-Centric Approach. International Conference on Computational Science (2004)
Sameep Mehta, Kaden Hazzard, Raghu Machiraju, Srinivasan Parthasarathy, John Wilkins
Detection and Visualization of Anomalous Structures in Molecular Dynamics Simulation Data. IEEE Visualization (2004)
Raghu Machiraju, Chris R. Johnson, Terry S. Yoo, Roger Crawfis, David S. Ebert, Don Stredney
Do I Really See a Bone? IEEE Visualization (2003)
Yootai Kim, Raghu Machiraju, David S. Thompson
Rough Surface Modeling Using Surface Growth. Shape Modeling International (2003)
Baback Moghaddam, Jinho Lee, Hanspeter Pfister, Raghu Machiraju
Model-Based 3D Face Capture with Shape-from-Silhouettes. AMFG (2003)
Ming Jiang, Tat-Sang Choy, Sameep Mehta, Matt Coatney, Steve Barr, Kaden Hazzard, David Richie, Srinivasan Parthasarathy, Raghu Machiraju, David S. Thompson, John Wilkins, Boyd Gatlin
Feature Mining Paradigms for Scientific Data. SDM (2003)
Bala Krishna Nakshatrala, David S. Thompson, Raghu Machiraju
Ranked representation of vector fields. Data Visualization: The State of the Art (2003)
Jinho Lee, Baback Moghaddam, Hanspeter Pfister, Raghu Machiraju
Silhouette-Based 3D Face Shape Recovery. Graphics Interface (2003)

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Publication Activity (10 Years)

Top Topics

Top Venues

Raghu Machiraju