Tim Hui-Ming Huang

Publication Activity (10 Years)

Years Active: 1995-2022
Publications (10 Years): 1

Top Topics

Computer Aided Diagnosis

Outcome Prediction

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Nahim Adnan, Maryam Zand, Tim Hui-Ming Huang, Jianhua Ruan
Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Md. Jamiul Jahid, Tim Hui-Ming Huang, Jianhua Ruan
A personalized committee classification approach to improving prediction of breast cancer metastasis. Bioinform. 30 (13) (2014)
Zijing Mao, Chifeng Ma, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang
BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data. BMC Bioinform. 15 (S-12) (2014)
Zijing Mao, Tim Hui-Ming Huang, Yidong Chen, Yufei Huang
BIMMER: A Bi-layer hidden Markov model for differential methylation analysis. BIBM (2013)
Zhi Han, Lu Tian, Thierry Pécot, Tim Hui-Ming Huang, Raghu Machiraju, Kun Huang
A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data. BMC Bioinform. 13 (S-2) (2012)
Jianhua Ruan, Md. Jamiul Jahid, Fei Gu, Chengwei Lei, Yi-Wen Huang, Ya-Ting Hsu, David G. Mutch, Chun-Liang Chen, Nameer B. Kirma, Tim Hui-Ming Huang
Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data. BCB (2012)
Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Hui-Ming Huang, Kenneth P. Nephew, Yunlong Liu, Lang Li
A dynamic time order network for time-series gene expression data analysis. BMC Syst. Biol. 6 (S-3) (2012)
Cenny Taslim, Tim Hui-Ming Huang, Shili Lin
DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models. Bioinform. 27 (11) (2011)
Shuying Sun, Yi-Wen Huang, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
Preprocessing differential methylation hybridization microarray data. BioData Min. 4 (2011)
Cenny Taslim, Shili Lin, Kun Huang, Tim Hui-Ming Huang
Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model. GENSiPS (2011)
Shuying Sun, Zhengyi Chen, Pearlly Yan, Yi-Wen Huang, Tim Hui-Ming Huang, Shili Lin
Identifying hypermethylated CpG islands using a quantile regression model. BMC Bioinform. 12 (2011)
Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer. BMC Syst. Biol. 5 (2011)
Hao Sun, Jiejun Wu, Priyankara Wikramasinghe, Sharmistha Pal, Ravi Gupta, Anirban Bhattacharyya, Francisco J. Agosto-Perez, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri
Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq. Nucleic Acids Res. 39 (1) (2011)
Hatice Gulcin Ozer, Yi-Wen Huang, Jiejun Wu, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang
Comparing Multiple Chip-Sequencing Experiments. J. Bioinform. Comput. Biol. 9 (2) (2011)
Heng-Yi Wu, Yu Wang, Pengyue Zheng, Guanglong Jiang, Yunlong Liu, Tim Hui-Ming Huang, Kenneth P. Nephew, Lang Li
An ERα/modulator regulatory network in the breast cancer cells. GENSiPS (2011)
Fei Gu, Hang-Kai Hsu, Pei-Yin Hsu, Jiejun Wu, Yilin Ma, Jeffrey D. Parvin, Tim Hui-Ming Huang, Victor X. Jin
Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data. BMC Syst. Biol. 4 (2010)
Leng Han, Siyuan Zheng, Shuying Sun, Tim Hui-Ming Huang, Zhongming Zhao
Genome-Wide DNA Methylation Profiling in 40 Breast Cancer Cell Lines. ICIC (1) (2010)
Brian A. Kennedy, Wenqing Gao, Tim Hui-Ming Huang, Victor X. Jin
HRTBLDb: an informative data resource for hormone receptors target binding loci. Nucleic Acids Res. 38 (Database-Issue) (2010)
Abbas Khalili, Tim Hui-Ming Huang, Shili Lin
A robust unified approach to analyzing methylation and gene expression data. Comput. Stat. Data Anal. 53 (5) (2009)
Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri
An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules. BMC Syst. Biol. 3 (2009)
Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments. BICoB (2009)
Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. BIBM (2009)
Shuying Sun, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
Identifying differentially methylated genes using mixed effect and generalized least square models. BMC Bioinform. 10 (2009)
Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang
Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinform. 25 (18) (2009)
Wei Dai, Jens M. Teodoridis, Janet Graham, Constanze Zeller, Tim Hui-Ming Huang, Pearlly Yan, J. Keith Vass, Robert Brown, Jim Paul
Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands. BMC Bioinform. 9 (2008)
Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
Probe signal correction for differential methylation hybridization experiments. BMC Bioinform. 9 (2008)
Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim
Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells. Bioinform. 24 (16) (2008)
Sun Kim, Meng Li, Hyun-il Henry Paik, Kenneth P. Nephew, Huidong Shi, Robin Kramer, Dong Xu, Tim Hui-Ming Huang
Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences. Pacific Symposium on Biocomputing (2008)
Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinform. 8 (2007)
Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim Hui-Ming Huang, Ramana V. Davuluri
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. Nucleic Acids Res. 34 (Database-Issue) (2006)
Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. Bioinform. 22 (18) (2006)
Lang Li, Huidong Shi, Constantin T. Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew
Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System. J. Comput. Biol. 12 (3) (2005)
Harpreet K. Monga, Adam L. Asare, Pearlly Yan, Tim Hui-Ming Huang, Charles William Caldwell
Online Microarray Laboratory Information Management System (M-LIMS): Linking Health Informatics and Bioinformatics. AMIA (2001)
James M. Keller, Paul D. Gader, Ozy Sjahputera, Charles William Caldwell, Tim Hui-Ming Huang
A Fuzzy Logic Rule-Based System for Chromosome Recognition. CBMS (1995)