Ümit V. Çatalyürek

ORCID

Publication Activity (10 Years)

Years Active: 1995-2024
Publications (10 Years): 66

Top Venues

CoRR

IPDPS Workshops

J. Parallel Distributed Comput.

IPDPS

Publications

Kaan Sancak, Zhigang Hua, Jin Fang, Yan Xie, Andrey Malevich, Bo Long, Muhammed Fatih Balin, Ümit V. Çatalyürek
A Scalable and Effective Alternative to Graph Transformers. CoRR (2024)
Muhammed Fatih Balin, Ümit V. Çatalyürek
Layer-Neighbor Sampling - Defusing Neighborhood Explosion in GNNs. NeurIPS (2023)
Deepak Ajwani, Rob H. Bisseling, Katrin Casel, Ümit V. Çatalyürek, Cédric Chevalier, Florian Chudigiewitsch, Marcelo Fonseca Faraj, Michael R. Fellows, Lars Gottesbüren, Tobias Heuer, George Karypis, Kamer Kaya, Jakub Lacki, Johannes Langguth, Xiaoye Sherry Li, Ruben Mayer, Johannes Meintrup, Yosuke Mizutani, François Pellegrini, Fabrizio Petrini, Frances A. Rosamond, Ilya Safro, Sebastian Schlag, Christian Schulz, Roohani Sharma, Darren Strash, Blair D. Sullivan, Bora Uçar, Albert-Jan Yzelman
Open Problems in (Hyper)Graph Decomposition. CoRR (2023)
Israt Nisa, Minjie Wang, Da Zheng, Qiang Fu, Ümit V. Çatalyürek, George Karypis
Optimizing Irregular Dense Operators of Heterogeneous GNN Models on GPU. IPDPS Workshops (2023)
Ümit V. Çatalyürek, Karen D. Devine, Marcelo Fonseca Faraj, Lars Gottesbüren, Tobias Heuer, Henning Meyerhenke, Peter Sanders, Sebastian Schlag, Christian Schulz, Daniel Seemaier, Dorothea Wagner
More Recent Advances in (Hyper)Graph Partitioning. ACM Comput. Surv. 55 (12) (2023)
Muhammed Fatih Balin, Xiaojing An, Abdurrahman Yasar, Ümit V. Çatalyürek
SGORP: A Subgradient-based Method for d-Dimensional Rectilinear Partitioning. CoRR (2023)
Muhammed Fatih Balin, Dominique LaSalle, Ümit V. Çatalyürek
Cooperative Minibatching in Graph Neural Networks. CoRR (2023)
George Karypis, Christian Schulz, Darren Strash, Deepak Ajwani, Rob H. Bisseling, Katrin Casel, Ümit V. Çatalyürek, Cédric Chevalier, Florian Chudigiewitsch, Marcelo Fonseca Faraj, Michael R. Fellows, Lars Gottesbüren, Tobias Heuer, Kamer Kaya, Jakub Lacki, Johannes Langguth, Xiaoye Sherry Li, Ruben Mayer, Johannes Meintrup, Yosuke Mizutani, François Pellegrini, Fabrizio Petrini, Frances A. Rosamond, Ilya Safro, Sebastian Schlag, Roohani Sharma, Blair D. Sullivan, Bora Uçar, Albert-Jan Yzelman
Recent Trends in Graph Decomposition (Dagstuhl Seminar 23331). Dagstuhl Reports 13 (8) (2023)
Bo Fang, M. Yusuf Özkaya, Ang Li, Ümit V. Çatalyürek, Sriram Krishnamoorthy
Efficient Hierarchical State Vector Simulation of Quantum Circuits via Acyclic Graph Partitioning. CoRR (2022)
Ümit V. Çatalyürek, Karen D. Devine, Marcelo Fonseca Faraj, Lars Gottesbüren, Tobias Heuer, Henning Meyerhenke, Peter Sanders, Sebastian Schlag, Christian Schulz, Daniel Seemaier, Dorothea Wagner
More Recent Advances in (Hyper)Graph Partitioning. CoRR (2022)
Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Ümit V. Çatalyürek
A Block-Based Triangle Counting Algorithm on Heterogeneous Environments. IEEE Trans. Parallel Distributed Syst. 33 (2) (2022)
Fazlay Rabbi, Christopher S. Daley, Ümit V. Çatalyürek, Hasan Metin Aktulga
A Portable Sparse Solver Framework for Large Matrices on Heterogeneous Architectures. HIPC (2022)
Abdurrahman Yasar, Muhammed Fatih Balin, Xiaojing An, Kaan Sancak, Ümit V. Çatalyürek
On Symmetric Rectilinear Partitioning. ACM J. Exp. Algorithmics 27 (2022)
Benjamin Cobb, Hemanth Kolla, Eric Phipps, Ümit V. Çatalyürek
FIST-HOSVD: fused in-place sequentially truncated higher order singular value decomposition. PASC (2022)
M. Yusuf Özkaya, Ümit V. Çatalyürek
A Simple and Elegant Mathematical Formulation for the Acyclic DAG Partitioning Problem. CoRR (2022)
Kasimir Gabert, Ali Pinar, Ümit V. Çatalyürek
Batch Dynamic Algorithm to Find k-Cores and Hierarchies. CoRR (2022)
Bo Fang, M. Yusuf Özkaval, Ang Li, Ümit V. Çatalyürek, Sriram Krishnamoorthy
Efficient Hierarchical State Vector Simulation of Quantum Circuits via Acyclic Graph Partitioning. CLUSTER (2022)
Muhammed Fatih Balin, Kaan Sancak, Ümit V. Çatalyürek
MG-GCN: A Scalable multi-GPU GCN Training Framework. ICPP (2022)
Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Ümit V. Çatalyürek
PGAbB: A Block-Based Graph Processing Framework for Heterogeneous Platforms. CoRR (2022)
Kasimir Gabert, Ali Pinar, Ümit V. Çatalyürek
-core hierarchies. GRADES-NDA@SIGMOD (2022)
Muhammed Fatih Balin, Ümit V. Çatalyürek
(LA)yer-neigh(BOR) Sampling: Defusing Neighborhood Explosion in GNNs. CoRR (2022)
Kasimir Gabert, Kaan Sancak, M. Yusuf Özkaya, Ali Pinar, Ümit V. Çatalyürek
EIGA: elastic and scalable dynamic graph analysis. SC (2021)
Kasimir Gabert, Ali Pinar, Ümit V. Çatalyürek
A Unifying Framework to Identify Dense Subgraphs on Streams: Graph Nuclei to Hypergraph Cores. WSDM (2021)
Ümit V. Çatalyürek
Implementing Performance Portable Graph Algorithms Using Task-Based Execution. IA3@SC (2021)
Kasimir Gabert, Ali Pinar, Ümit V. Çatalyürek
Shared-Memory Scalable k-Core Maintenance on Dynamic Graphs and Hypergraphs. IPDPS Workshops (2021)
Abdurrahman Yasar, Kasimir Gabert, Ümit V. Çatalyürek
Parallel graph algorithms by blocks: from I/O to algorithms. CF (2021)
Xiaojing An, Ümit V. Çatalyürek
Column-Segmented Sparse Matrix-Matrix Multiplication on Multicore CPUs. HiPC (2021)
Abdullah Alperen, Md. Afibuzzaman, Fazlay Rabbi, M. Yusuf Özkaya, Ümit V. Çatalyürek, Hasan Metin Aktulga
An Evaluation of Task-Parallel Frameworks for Sparse Solvers on Multicore and Manycore CPU Architectures. ICPP (2021)
Muhammed Fatih Balin, Kaan Sancak, Ümit V. Çatalyürek
MG-GCN: Scalable Multi-GPU GCN Training Framework. CoRR (2021)
Kasimir Gabert, Ümit V. Çatalyürek
PIGO: A Parallel Graph Input/Output Library. IPDPS Workshops (2021)
Adriano de Bernardi Schneider, Colby T. Ford, Reilly Hostager, John Williams, Michael Cioce, Ümit V. Çatalyürek, Joel O. Wertheim, Daniel Janies
StrainHub: a phylogenetic tool to construct pathogen transmission networks. Bioinform. 36 (3) (2020)
Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Ümit V. Çatalyürek
A Block-Based Triangle Counting Algorithm on Heterogeneous Environments. CoRR (2020)
Eric R. Hein, Srinivas Eswar, Abdurrahman Yasar, Jiajia Li, Jeffrey S. Young, Thomas M. Conte, Ümit V. Çatalyürek, Richard W. Vuduc, E. Jason Riedy, Bora Uçar
Programming Strategies for Irregular Algorithms on the Emu Chick. ACM Trans. Parallel Comput. 7 (4) (2020)
Abdurrahman Yasar, Muhammed Fatih Balin, Xiaojing An, Kaan Sancak, Ümit V. Çatalyürek
On Symmetric Rectilinear Matrix Partitioning. CoRR (2020)
M. Yusuf Özkaya, M. Fatih Balin, Ali Pinar, Ümit V. Çatalyürek
A scalable graph generation algorithm to sample over a given shell distribution. IPDPS Workshops (2020)
Eric R. Hein, Srinivas Eswar, Abdurrahman Yasar, Jiajia Li, Jeffrey S. Young, Thomas M. Conte, Ümit V. Çatalyürek, Rich Vuduc, E. Jason Riedy, Bora Uçar
Programming Strategies for Irregular Algorithms on the Emu Chick. CoRR (2019)
Julien Herrmann, M. Yusuf Özkaya, Bora Uçar, Kamer Kaya, Ümit V. Çatalyürek
Multilevel Algorithms for Acyclic Partitioning of Directed Acyclic Graphs. SIAM J. Sci. Comput. 41 (4) (2019)
Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Michael M. Wolf, Jeffrey S. Young, Ümit V. Çatalyürek
Linear Algebra-Based Triangle Counting via Fine-Grained Tasking on Heterogeneous Environments : (Update on Static Graph Challenge). HPEC (2019)
Abdurrahman Yasar, Ümit V. Çatalyürek
Heuristics for Symmetric Rectilinear Matrix Partitioning. CoRR (2019)
M. Yusuf Özkaya, Anne Benoit, Bora Uçar, Julien Herrmann, Ümit V. Çatalyürek
A Scalable Clustering-Based Task Scheduler for Homogeneous Processors Using DAG Partitioning. IPDPS (2019)
Seher Acer, Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael M. Wolf, Ümit V. Çatalyürek
Scalable Triangle Counting on Distributed-Memory Systems. HPEC (2019)
Md. Afibuzzaman, Fazlay Rabbi, M. Yusuf Özkaya, Hasan Metin Aktulga, Ümit V. Çatalyürek
DeepSparse: A Task-Parallel Framework for SparseSolvers on Deep Memory Architectures. HiPC (2019)
Mehmet Deveci, Karen D. Devine, Kevin T. Pedretti, Mark A. Taylor, Sivasankaran Rajamanickam, Ümit V. Çatalyürek
Geometric Mapping of Tasks to Processors on Parallel Computers with Mesh or Torus Networks. IEEE Trans. Parallel Distributed Syst. 30 (9) (2019)
Jiajia Li, Bora Uçar, Ümit V. Çatalyürek, Jimeng Sun, Kevin J. Barker, Richard W. Vuduc
Efficient and effective sparse tensor reordering. ICS (2019)
Anne Benoit, Ümit V. Çatalyürek
Special issue: Selected papers from IPDPS'18. J. Parallel Distributed Comput. 133 (2019)
M. Yusuf Özkaya, Anne Benoit, Ümit V. Çatalyürek
Improving Locality-Aware Scheduling with Acyclic Directed Graph Partitioning. PPAM (1) (2019)
Abdurrahman Yasar, Ümit V. Çatalyürek
An Iterative Global Structure-Assisted Labeled Network Aligner. KDD (2018)
M. Yusuf Özkaya, Ahmet Erdem Sanyuce, Ali Pinar, Ümit V. Çatalyürek
Local Detection of Critical Nodes in Active Graphs. ASONAM (2018)
Abdurrahman Yasar, Ümit V. Çatalyürek
An Iterative Global Structure-Assisted Labeled Network Aligner. CoRR (2018)
Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael M. Wolf, Jonathan W. Berry, Ümit V. Çatalyürek
Fast Triangle Counting Using Cilk. HPEC (2018)
Ümit V. Çatalyürek
HCW 2018 Keynote Talk 2. IPDPS Workshops (2018)
Abdurrahman Yasar, Bora Uçar, Ümit V. Çatalyürek
SiNA: A Scalable Iterative Network Aligner. ASONAM (2018)
Izzet F. Senturk, Ponnuraman Balakrishnan, Anas Abu-Doleh, Kamer Kaya, Qutaibah M. Malluhi, Ümit V. Çatalyürek
A resource provisioning framework for bioinformatics applications in multi-cloud environments. Future Gener. Comput. Syst. 78 (2018)
Changwan Hong, Aravind Sukumaran-Rajam, Bortik Bandyopadhyay, Jinsung Kim, Süreyya Emre Kurt, Israt Nisa, Shivani Sabhlok, Ümit V. Çatalyürek, Srinivasan Parthasarathy, P. Sadayappan
Efficient sparse-matrix multi-vector product on GPUs. HPDC (2018)
Mehmet Deveci, Karen D. Devine, Kevin T. Pedretti, Mark A. Taylor, Sivasankaran Rajamanickam, Ümit V. Çatalyürek
Geometric Partitioning and Ordering Strategies for Task Mapping on Parallel Computers. CoRR (2018)
Ümit V. Çatalyürek
Guest Editor's Introduction: Selected Papers from ACM-BCB 2014. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Julien Herrmann, Jonathan Kho, Bora Uçar, Kamer Kaya, Ümit V. Çatalyürek
Acyclic Partitioning of Large Directed Acyclic Graphs. CCGrid (2017)
Yusuf Özkaya, Ahmet Erdem Sariyüce, Ümit V. Çatalyürek, Ali Pinar
Active Betweenness Cardinality: Algorithms and Applications. CoRR (2017)
Ümit V. Çatalyürek
GABB Keynote. IPDPS Workshops (2017)
Ahmet Erdem Sariyüce, C. Seshadhri, Ali Pinar, Ümit V. Çatalyürek
Nucleus Decompositions for Identifying Hierarchy of Dense Subgraphs. ACM Trans. Web 11 (3) (2017)
Ahmet Erdem Sariyüce, Kamer Kaya, Erik Saule, Ümit V. Çatalyürek
Graph Manipulations for Fast Centrality Computation. ACM Trans. Knowl. Discov. Data 11 (3) (2017)
Ahmet Erdem Sariyüce, Bugra Gedik, Gabriela Jacques-Silva, Kun-Lung Wu, Ümit V. Çatalyürek
SONIC: streaming overlapping community detection. Data Min. Knowl. Discov. 30 (4) (2016)
Ahmet Erdem Sariyüce, Bugra Gedik, Gabriela Jacques-Silva, Kun-Lung Wu, Ümit V. Çatalyürek
Incremental k-core decomposition: algorithms and evaluation. VLDB J. 25 (3) (2016)
Tomás Dytrych, Pieter Maris, Kristina D. Launey, Jerry P. Draayer, James P. Vary, Daniel Langr, Erik Saule, Mark A. Caprio, Ümit V. Çatalyürek, Masha Sosonkina
Efficacy of the SU(3) scheme for ab initio large-scale calculations beyond the lightest nuclei. Comput. Phys. Commun. 207 (2016)
Mehmet Deveci, Sivasankaran Rajamanickam, Karen D. Devine, Ümit V. Çatalyürek
Multi-Jagged: A Scalable Parallel Spatial Partitioning Algorithm. IEEE Trans. Parallel Distributed Syst. 27 (3) (2016)
Julien Herrmann, Zachary L. Witter, Nakul Patel, Jonathan Kho, Daniel A. Janies, Ümit V. Çatalyürek
Visual analytics on the spread of pathogens. BCB (2016)
Ayat Hatem, Kamer Kaya, Jeffrey D. Parvin, Kun Huang, Ümit V. Çatalyürek
MICA: MicroRNA integration for active module discovery. BCB (2015)
Anas Abu-Doleh, Ümit V. Çatalyürek
Spaler: Spark and GraphX based de novo genome assembler. IEEE BigData (2015)
Ahmet Erdem Sariyüce, Erik Saule, Kamer Kaya, Ümit V. Çatalyürek
Regularizing graph centrality computations. J. Parallel Distributed Comput. 76 (2015)
Daniel Janies, Zachary L. Witter, Christian Gibson, Thomas Kraft, Izzet F. Senturk, Ümit V. Çatalyürek
Syndromic Surveillance of Infectious Diseases meets Molecular Epidemiology in a Workflow and Phylogeographic Application. MedInfo (2015)
Ahmet Erdem Sariyüce, Erik Saule, Kamer Kaya, Ümit V. Çatalyürek
Incremental closeness centrality in distributed memory. Parallel Comput. 47 (2015)
Nilgun Ferhatosmanoglu, Theodore T. Allen, Ümit V. Çatalyürek
Mitigating bias in planning two-colour microarray experiments. Int. J. Data Min. Bioinform. 13 (1) (2015)
Ahmet Erdem Sariyüce, C. Seshadhri, Ali Pinar, Ümit V. Çatalyürek
Finding the Hierarchy of Dense Subgraphs using Nucleus Decompositions. WWW (2015)
Marcelo A. Lopetegui, Barbara A. Lara, Po-Yin Yen, Ümit V. Çatalyürek, Philip R. O. Payne
A Novel Multiple Choice Question Generation Strategy: Alternative Uses for Controlled Vocabulary Thesauri in Biomedical-Sciences Education. AMIA (2015)
Mehmet Deveci, Kamer Kaya, Bora Uçar, Ümit V. Çatalyürek
Hypergraph partitioning for multiple communication cost metrics: Model and methods. J. Parallel Distributed Comput. 77 (2015)
Mehmet Deveci, Kamer Kaya, Bora Uçar, Ümit V. Çatalyürek
Fast and High Quality Topology-Aware Task Mapping. IPDPS (2015)
Stephen Larson, Ümit V. Çatalyürek, Ananth Kalyanaraman
HiCOMB Keynote and Invited Talks. IPDPS Workshops (2014)
Ahmet Erdem Sariyüce, Erik Saule, Kamer Kaya, Ümit V. Çatalyürek
Hardware/Software Vectorization for Closeness Centrality on Multi-/Many-Core Architectures. IPDPS Workshops (2014)
Prasad Calyam, Alex Berryman, Erik Saule, Hari Subramoni, Paul Schopis, Gordon Springer, Ümit V. Çatalyürek, Dhabaleswar K. Panda
Wide-area overlay networking to manage science DMZ accelerated flows. ICNC (2014)
Mehmet Deveci, Sivasankaran Rajamanickam, Vitus J. Leung, Kevin T. Pedretti, Stephen L. Olivier, David P. Bunde, Ümit V. Çatalyürek, Karen D. Devine
Exploiting Geometric Partitioning in Task Mapping for Parallel Computers. IPDPS (2014)
Ahmet Erdem Sariyüce, Erik Saule, Ümit V. Çatalyürek
On Distributed Graph Coloring with Iterative Recoloring. CoRR (2014)
Anas Abu-Doleh, Kamer Kaya, Mohamed Abouelhoda, Ümit V. Çatalyürek
Extracting Maximal Exact Matches on GPU. IPDPS Workshops (2014)
Onur Küçüktunç, Erik Saule, Kamer Kaya, Ümit V. Çatalyürek
Diversifying Citation Recommendations. ACM Trans. Intell. Syst. Technol. 5 (4) (2014)
Timothy D. R. Hartley, Ümit V. Çatalyürek, Antonio Ruiz, Francisco D. Igual, Rafael Mayo, Manuel Ujaldon
Author's retrospective for biomedical image analysis on a cooperative cluster of gpus and multicores. ICS 25th Anniversary (2014)
Myoungsoo Jung, Ellis Herbert Wilson III, Wonil Choi, John Shalf, Hasan Metin Aktulga, Chao Yang, Erik Saule, Ümit V. Çatalyürek, Mahmut T. Kandemir
Exploring the future of out-of-core computing with compute-local non-volatile memory. Sci. Program. 22 (2) (2014)
Ahmet Erdem Sariyüce, C. Seshadhri, Ali Pinar, Ümit V. Çatalyürek
Finding the Hierarchy of Dense Subgraphs using Nucleus Decompositions. CoRR (2014)
Shahid H. Bokhari, Ümit V. Çatalyürek, Metin Nafi Gürcan
Massively multithreaded maxflow for image segmentation on the Cray XMT-2. Concurr. Comput. Pract. Exp. 26 (18) (2014)
Mehmet Deveci, Ümit V. Çatalyürek, Amanda E. Toland
mrSNP: Software to detect SNP effects on microRNA binding. BMC Bioinform. 15 (2014)
Mehmet Deveci, Kamer Kaya, Bora Uçar, Ümit V. Çatalyürek
A Push-Relabel-Based Maximum Cardinality Bipartite Matching Algorithm on GPUs. ICPP (2013)
Ümit V. Çatalyürek, Kamer Kaya, Ahmet Erdem Sariyüce, Erik Saule
Shattering and Compressing Networks for Betweenness Centrality. SDM (2013)
Anas Abu-Doleh, Erik Saule, Kamer Kaya, Ümit V. Çatalyürek
Masher: Mapping Long(er) Reads with Hash-based Genome Indexing on GPUs. BCB (2013)
Mehmet Deveci, Kamer Kaya, Bora Uçar, Ümit V. Çatalyürek
GPU Accelerated Maximum Cardinality Matching Algorithms for Bipartite Graphs. Euro-Par (2013)
Ayat Hatem, Doruk Bozdag, Amanda E. Toland, Ümit V. Çatalyürek
Benchmarking short sequence mapping tools. BMC Bioinform. 14 (2013)
Ahmet Erdem Sariyüce, Erik Saule, Kamer Kaya, Ümit V. Çatalyürek
STREAMER: A distributed framework for incremental closeness centrality computation. CLUSTER (2013)
Ayat Hatem, Kamer Kaya, Ümit V. Çatalyürek
PRASE: PageRank-based Active Subnetwork Extraction. BCB (2013)
Erik Saule, Kamer Kaya, Ümit V. Çatalyürek
Performance Evaluation of Sparse Matrix Multiplication Kernels on Intel Xeon Phi. PPAM (1) (2013)
Erik Saule, Kamer Kaya, Ümit V. Çatalyürek
Performance Evaluation of Sparse Matrix Multiplication Kernels on Intel Xeon Phi CoRR (2013)
Anne Benoit, Ümit V. Çatalyürek, Yves Robert, Erik Saule
A survey of pipelined workflow scheduling: Models and algorithms. ACM Comput. Surv. 45 (4) (2013)
Ahmet Erdem Sariyüce, Bugra Gedik, Gabriela Jacques-Silva, Kun-Lung Wu, Ümit V. Çatalyürek
Streaming Algorithms for k-core Decomposition. Proc. VLDB Endow. 6 (6) (2013)
Onur Küçüktunç, Kamer Kaya, Erik Saule, Ümit V. Çatalyürek
Fast recommendation on bibliographic networks with sparse-matrix ordering and partitioning. Soc. Netw. Anal. Min. 3 (4) (2013)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ümit V. Çatalyürek