Doruk Bozdag

Publication Activity (10 Years)

Years Active: 2005-2013
Publications (10 Years): 0

Top Topics

Decision Support

Clustering Algorithm

Top Venues

J. Parallel Distributed Comput.

Publications

Ayat Hatem, Doruk Bozdag, Amanda E. Toland, Ümit V. Çatalyürek
Benchmarking short sequence mapping tools. BMC Bioinform. 14 (2013)
Erik Saule, Doruk Bozdag, Ümit V. Çatalyürek
Optimizing the stretch of independent tasks on a cluster: From sequential tasks to moldable tasks. J. Parallel Distributed Comput. 72 (4) (2012)
Ayat Hatem, Doruk Bozdag, Ümit V. Çatalyürek
Benchmarking Short Sequence Mapping Tools. BIBM (2011)
Doruk Bozdag, Ümit V. Çatalyürek, Assefaw H. Gebremedhin, Fredrik Manne, Erik G. Boman, Füsun Özgüner
Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation. SIAM J. Sci. Comput. 32 (4) (2010)
Doruk Bozdag, Ayat Hatem, Ümit V. Çatalyürek
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform. IPDPS Workshops (2010)
Doruk Bozdag, Ashwin S. Kumar, Ümit V. Çatalyürek
Comparative analysis of biclustering algorithms. BCB (2010)
Erik Saule, Doruk Bozdag, Ümit V. Çatalyürek
A Moldable Online Scheduling Algorithm and Its Application to Parallel Short Sequence Mapping. JSSPP (2010)
Doruk Bozdag, Füsun Özgüner, Ümit V. Çatalyürek
Compaction of Schedules and a Two-Stage Approach for Duplication-Based DAG Scheduling. IEEE Trans. Parallel Distributed Syst. 20 (6) (2009)
Ümit V. Çatalyürek, Erik G. Boman, Karen D. Devine, Doruk Bozdag, Robert T. Heaphy, Lee Ann Riesen
A repartitioning hypergraph model for dynamic load balancing. J. Parallel Distributed Comput. 69 (8) (2009)
Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek, Kun Huang
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments. BICoB (2009)
Doruk Bozdag, Catalin C. Barbacioru, Ümit V. Çatalyürek
Parallelization of Mapping Algorithms for Next Generation Sequencing Applications. Combinatorial Scientific Computing (2009)
Doruk Bozdag, Catalin C. Barbacioru, Ümit V. Çatalyürek
Parallel short sequence mapping for high throughput genome sequencing. IPDPS (2009)
Doruk Bozdag, Jeffrey D. Parvin, Ümit V. Çatalyürek
A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets. BICoB (2009)
Doruk Bozdag, Assefaw Hadish Gebremedhin, Fredrik Manne, Erik G. Boman, Ümit V. Çatalyürek
A framework for scalable greedy coloring on distributed-memory parallel computers. J. Parallel Distributed Comput. 68 (4) (2008)
Ümit V. Çatalyürek, Erik G. Boman, Karen D. Devine, Doruk Bozdag, Robert T. Heaphy, Lee Ann Riesen
Hypergraph-based Dynamic Load Balancing for Adaptive Scientific Computations. IPDPS (2007)
Yaoyao Gu, Doruk Bozdag, Eylem Ekici
Mobile Element Based Differentiated Message Delivery in Wireless Sensor Networks. WOWMOM (2006)
Yaoyao Gu, Doruk Bozdag, Robert W. Brewer, Eylem Ekici
Data harvesting with mobile elements in wireless sensor networks. Comput. Networks 50 (17) (2006)
Eylem Ekici, Yaoyao Gu, Doruk Bozdag
Mobility-based communication in wireless sensor networks. IEEE Commun. Mag. 44 (7) (2006)
Doruk Bozdag, Ümit V. Çatalyürek, Füsun Özgüner
A task duplication based bottom-up scheduling algorithm for heterogeneous environments. IPDPS (2006)
Doruk Bozdag, Füsun Özgüner, Eylem Ekici, Ümit V. Çatalyürek
A Task Duplication Based Scheduling Algorithm Using Partial Schedules. ICPP (2005)
Erik G. Boman, Doruk Bozdag, Ümit V. Çatalyürek, Assefaw Hadish Gebremedhin, Fredrik Manne
A Scalable Parallel Graph Coloring Algorithm for Distributed Memory Computers. Euro-Par (2005)
Yaoyao Gu, Doruk Bozdag, Eylem Ekici, Füsun Özgüner, Chang-Gun Lee
Partitioning based mobile element scheduling in wireless sensor networks. SECON (2005)
Doruk Bozdag, Ümit V. Çatalyürek, Assefaw Hadish Gebremedhin, Fredrik Manne, Erik G. Boman, Füsun Özgüner
A Parallel Distance-2 Graph Coloring Algorithm for Distributed Memory Computers. HPCC (2005)