Chao Yang

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 52

Top Topics

Randomized Algorithms

Sparse Matrices

Distributed Memory

Asynchronous Communication

Top Venues

Comput. Phys. Commun.

J. Comput. Phys.

J. Comput. Sci.

Publications

Dong Min Roh, Esmond Ng, Chao Yang, Dean Lee, Pieter Maris, James P. Vary
Accelerating Eigenvalue Computation for Nuclear Structure Calculations via Perturbative Corrections. CoRR (2024)
Daan Camps, Lin Lin, Roel Van Beeumen, Chao Yang
Explicit Quantum Circuits for Block Encodings of Certain Sparse Matrices. SIAM J. Matrix Anal. Appl. 45 (1) (2024)
Abdullah Alperen, Hasan Metin Aktulga, Pieter Maris, Chao Yang
Hybrid eigensolvers for nuclear configuration interaction calculations. Comput. Phys. Commun. 292 (2023)
Senwei Liang, Aditya N. Singh, Yuanran Zhu, David T. Limmer, Chao Yang
Probing reaction channels via reinforcement learning. Mach. Learn. Sci. Technol. 4 (4) (2023)
Li Zhou, Chao Yang, Weiguo Gao, Talita Perciano, Karen M. Davies, Nicholas K. Sauter
A machine learning pipeline for membrane segmentation of cryo-electron tomograms. J. Comput. Sci. 66 (2023)
Jia Yin, Yang-hao Chan, Felipe H. da Jornada, Diana Qiu, Chao Yang, Steven G. Louie
Analyzing and predicting non-equilibrium many-body dynamics via dynamic mode decomposition. J. Comput. Phys. 477 (2023)
Meiyue Shao, Dossay Oryspayev, Chao Yang, Pieter Maris, Brandon G. Cook
Fault-Tolerant LOBPCG for Nuclear CI Calculations. HPC Asia (2023)
Shizhe Jiao, Zhenlin Zhang, Kai Wu, Lingyun Wan, Huanhuan Ma, Jielan Li, Sheng Chen, Xinming Qin, Jie Liu, Zijing Ding, Jinlong Yang, Yingzhou Li, Wei Hu, Lin Lin, Chao Yang
KSSOLV 2.0: An efficient MATLAB toolbox for solving the Kohn-Sham equations with plane-wave basis set. Comput. Phys. Commun. 279 (2022)
Jia Yin, Yang-hao Chan, Felipe H. da Jornada, Diana Qiu, Steven G. Louie, Chao Yang
Using dynamic mode decomposition to predict the dynamics of a two-time non-equilibrium Green's function. J. Comput. Sci. 64 (2022)
Linjian Ma, Chao Yang
Low rank approximation in simulations of quantum algorithms. J. Comput. Sci. 59 (2022)
Khaled Z. Ibrahim, Chao Yang, Pieter Maris
Performance Portability of Sparse Block Diagonal Matrix Multiple Vector Multiplications on GPUs. P3HPC@SC (2022)
Roel Van Beeumen, Khaled Z. Ibrahim, Gregory D. Kahanamoku-Meyer, Norman Y. Yao, Chao Yang
Enhancing scalability of a matrix-free eigensolver for studying many-body localization. Int. J. High Perform. Comput. Appl. 36 (3) (2022)
Boyao Zhang, Chao Yang, Haikuo Zhang, Zongguo Wang, Jingqi Sun, Lihua Wang, Yonghua Zhao, Yangang Wang
Graph Representation Learning for Similarity Stocks Analysis. J. Signal Process. Syst. 94 (11) (2022)
Hadia Ahmed, David B. Williams-Young, Khaled Z. Ibrahim, Chao Yang
Performance Modeling and Tuning for DFT Calculations on Heterogeneous Architectures. IPDPS Workshops (2021)
Taylor M. Hernandez, Roel Van Beeumen, Mark A. Caprio, Chao Yang
A greedy algorithm for computing eigenvalues of a symmetric matrix with localized eigenvectors. Numer. Linear Algebra Appl. 28 (2) (2021)
Boyao Zhang, Zhongrui Li, Chao Yang, Zongguo Wang, Yonghua Zhao, Jingqi Sun, Lihua Wang
Similarity Analysis of Knowledge Graph-based Company Embedding for Stocks Portfolio. SmartCloud (2021)
Daan Camps, Roel Van Beeumen, Chao Yang
Quantum Fourier transform revisited. Numer. Linear Algebra Appl. 28 (1) (2021)
Roel Van Beeumen, Lana Perisa, Daniel Kressner, Chao Yang
A Flexible Power Method for Solving Infinite Dimensional Tensor Eigenvalue Problems. CoRR (2021)
Aydin Buluç, Tamara G. Kolda, Stefan M. Wild, Mihai Anitescu, Anthony DeGennaro, John Jakeman, Chandrika Kamath, Ramakrishnan Kannan, Miles E. Lopes, Per-Gunnar Martinsson, Kary Myers, Jelani Nelson, Juan M. Restrepo, C. Seshadhri, Draguna L. Vrabie, Brendt Wohlberg, Stephen J. Wright, Chao Yang, Peter Zwart
Randomized Algorithms for Scientific Computing (RASC). CoRR (2021)
David B. Williams-Young, Abhishek Bagusetty, Wibe A. de Jong, Douglas Doerfler, Hubertus Johannes Jacobus Van Dam, Álvaro Vázquez-Mayagoitia, Theresa L. Windus, Chao Yang
Achieving performance portability in Gaussian basis set density functional theory on accelerator based architectures in NWChemEx. Parallel Comput. 108 (2021)
Jia Yin, Yang-hao Chan, Felipe H. da Jornada, Diana Qiu, Chao Yang, Steven G. Louie
Analyzing and predicting non-equilibrium many-body dynamics via dynamic mode decomposition. CoRR (2021)
Jinqiu Gao, Weihua Gui, Chao Yang, Hongwei Tao, Tao Peng
Demagnetization Fault Detection based on Position-Frequency Analysis for PMSMs in Nonstationary Conditions. CAA SAFEPROCESS (2021)
David B. Williams-Young, Paul G. Beckman, Chao Yang
A Shift Selection Strategy for Parallel Shift-invert Spectrum Slicing in Symmetric Self-consistent Eigenvalue Computation. ACM Trans. Math. Softw. 46 (4) (2020)
Victor Wen-zhe Yu, Carmen Campos, William Dawson, Alberto García, Ville Havu, Ben Hourahine, William P. Huhn, Mathias Jacquelin, Weile Jia, Murat Keçeli, Raul Laasner, Yingzhou Li, Lin Lin, Jianfeng Lu, Jonathan Moussa, José E. Román, Álvaro Vázquez-Mayagoitia, Chao Yang, Volker Blum
ELSI - An open infrastructure for electronic structure solvers. Comput. Phys. Commun. 256 (2020)
Li Zhou, Lihao Yan, Mark A. Caprio, Weiguo Gao, Chao Yang
Solving the k-sparse Eigenvalue Problem with Reinforcement Learning. CoRR (2020)
Daan Camps, Roel Van Beeumen, Chao Yang
Quantum Fourier Transform Revisited. CoRR (2020)
David B. Williams-Young, Wibe A. de Jong, Hubertus Johannes Jacobus Van Dam, Chao Yang
On the Efficient Evaluation of the Exchange Correlation Potential on Graphics Processing Unit Clusters. CoRR (2020)
David B. Williams-Young, Chao Yang
Parallel Shift-Invert Spectrum Slicing on Distributed Architectures with GPU Accelerators. ICPP (2020)
Roel Van Beeumen, Khaled Z. Ibrahim, Gregory D. Kahanamoku-Meyer, Norman Y. Yao, Chao Yang
Enhancing Scalability of a Matrix-Free Eigensolver for Studying Many-Body Localization. CoRR (2020)
Roel Van Beeumen, Gregory D. Kahanamoku-Meyer, Norman Y. Yao, Chao Yang
A Scalable Matrix-Free Iterative Eigensolver for Studying Many-Body Localization. HPC Asia (2020)
Mauro Del Ben, Felipe H. da Jornada, Andrew Canning, Nathan Wichmann, Karthik Raman, Ruchira Sasanka, Chao Yang, Steven G. Louie, Jack Deslippe
Large-scale GW calculations on pre-exascale HPC systems. Comput. Phys. Commun. 235 (2019)
David B. Williams-Young, Paul G. Beckman, Chao Yang
A Shift Selection Strategy for Parallel Shift-Invert Spectrum Slicing in Symmetric Self-Consistent Eigenvalue Computation. CoRR (2019)
Victor Wen-zhe Yu, Fabiano Corsetti, Alberto García, William P. Huhn, Mathias Jacquelin, Weile Jia, Björn Lange, Lin Lin, Jianfeng Lu, Wenhui Mi, Ali Seifitokaldani, Álvaro Vázquez-Mayagoitia, Chao Yang, Haizhao Yang, Volker Blum
ELSI: A unified software interface for Kohn-Sham electronic structure solvers. Comput. Phys. Commun. 222 (2018)
Mathias Jacquelin, Lin Lin, Chao Yang
PSelInv - A distributed memory parallel algorithm for selected inversion: The non-symmetric case. Parallel Comput. 74 (2018)
Mathias Jacquelin, Lin Lin, Weile Jia, Yonghua Zhao, Chao Yang
A Left-Looking Selected Inversion Algorithm and Task Parallelism on Shared Memory Systems. HPC Asia (2018)
Roel Van Beeumen, Osni Marques, Esmond G. Ng, Chao Yang, Zhaojun Bai, Lixin Ge, Oleksiy Kononenko, Zenghai Li, Cho-Kuen Ng, Liling Xiao
Computing resonant modes of accelerator cavities by solving nonlinear eigenvalue problems via rational approximation. J. Comput. Phys. 374 (2018)
Wei Hu, Meiyue Shao, Andrea Cepellotti, Felipe H. da Jornada, Lin Lin, Kyle Thicke, Chao Yang, Steven G. Louie
Accelerating Optical Absorption Spectra and Exciton Energy Computation via Interpolative Separable Density Fitting. ICCS (2) (2018)
Meiyue Shao, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
Accelerating nuclear configuration interaction calculations through a preconditioned block iterative eigensolver. Comput. Phys. Commun. 222 (2018)
Meiyue Shao, Felipe H. da Jornada, Lin Lin, Chao Yang, Jack Deslippe, Steven G. Louie
A Structure Preserving Lanczos Algorithm for Computing the Optical Absorption Spectrum. SIAM J. Matrix Anal. Appl. 39 (2) (2018)
Mathias Jacquelin, Lin Lin, Chao Yang
PSelInv - A Distributed Memory Parallel Algorithm for Selected Inversion: The Symmetric Case. ACM Trans. Math. Softw. 43 (3) (2017)
Mathias Jacquelin, Lin Lin, Chao Yang
PSelInv - A Distributed Memory Parallel Algorithm for Selected Inversion: the non-symmetric Case. CoRR (2017)
Eugene Vecharynski, Jiri Brabec, Meiyue Shao, Niranjan Govind, Chao Yang
Efficient block preconditioned eigensolvers for linear response time-dependent density functional theory. Comput. Phys. Commun. 221 (2017)
Roel Van Beeumen, David B. Williams-Young, Joseph M. Kasper, Chao Yang, Esmond G. Ng, Xiaosong Li
A Model Order Reduction Algorithm for Estimating the Absorption Spectrum. CoRR (2017)
Gaigong Zhang, Lin Lin, Wei Hu, Chao Yang, John E. Pask
Adaptive local basis set for Kohn-Sham density functional theory in a discontinuous Galerkin framework II: Force, vibration, and molecular dynamics calculations. J. Comput. Phys. 335 (2017)
Hasan Metin Aktulga, Md. Afibuzzaman, Samuel Williams, Aydin Buluç, Meiyue Shao, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
A High Performance Block Eigensolver for Nuclear Configuration Interaction Calculations. IEEE Trans. Parallel Distributed Syst. 28 (6) (2017)
Mathias Jacquelin, Lin Lin, Nathan Wichmann, Chao Yang
Enhancing Scalability and Load Balancing of Parallel Selected Inversion via Tree-Based Asynchronous Communication. IPDPS (2016)
Meiyue Shao, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
Accelerating Nuclear Configuration Interaction Calculations through a Preconditioned Block Iterative Eigensolver. CoRR (2016)
Meiyue Shao, Chao Yang
BSEPACK User's Guide. CoRR (2016)
Jiri Brabec, Chao Yang, Evgeny Epifanovsky, Anna I. Krylov, Esmond Ng
Reduced-cost sparsity-exploiting algorithm for solving coupled-cluster equations. J. Comput. Chem. 37 (12) (2016)
Mathias Jacquelin, Lin Lin, Weile Jia, Yonghua Zhao, Chao Yang
A Left-Looking Selected Inversion Algorithm and Task Parallelism on Shared Memory Systems. CoRR (2016)
Lin Lin, Yousef Saad, Chao Yang
Approximating Spectral Densities of Large Matrices. SIAM Rev. 58 (1) (2016)
Fabien Bruneval, Tonatiuh Rangel, Samia M. Hamed, Meiyue Shao, Chao Yang, Jeffrey B. Neaton
molgw 1: Many-body perturbation theory software for atoms, molecules, and clusters. Comput. Phys. Commun. 208 (2016)
Mathias Jacquelin, Lin Lin, Nathan Wichmann, Chao Yang
Enhancing the scalability and load balancing of the parallel selected inversion algorithm via tree-based asynchronous communication. CoRR (2015)
Fang Liu, Lin Lin, Derek Vigil-Fowler, Johannes Lischner, Alexander F. Kemper, Sahar Sharifzadeh, Felipe H. da Jornada, Jack Deslippe, Chao Yang, Jeffrey B. Neaton, Steven G. Louie
Numerical integration for ab initio many-electron self energy calculations within the GW approximation. J. Comput. Phys. 286 (2015)
Dmitry Zuev, Eugene Vecharynski, Chao Yang, Natalie Orms, Anna I. Krylov
New algorithms for iterative matrix-free eigensolvers in quantum chemistry. J. Comput. Chem. 36 (5) (2015)
Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
Improving the scalability of a symmetric iterative eigensolver for multi-core platforms. Concurr. Comput. Pract. Exp. 26 (16) (2014)
Hasan Metin Aktulga, Lin Lin, Christopher Haine, Esmond G. Ng, Chao Yang
Parallel eigenvalue calculation based on multiple shift-invert Lanczos and contour integral based spectral projection method. Parallel Comput. 40 (7) (2014)
Myoungsoo Jung, Ellis Herbert Wilson III, Wonil Choi, John Shalf, Hasan Metin Aktulga, Chao Yang, Erik Saule, Ümit V. Çatalyürek, Mahmut T. Kandemir
Exploring the future of out-of-core computing with compute-local non-volatile memory. Sci. Program. 22 (2) (2014)
Mathias Jacquelin, Lin Lin, Chao Yang
PSelInv - A Distributed Memory Parallel Algorithm for Selected Inversion : the Symmetric Case. CoRR (2014)
Hasan Metin Aktulga, Aydin Buluç, Samuel Williams, Chao Yang
Optimizing Sparse Matrix-Multiple Vectors Multiplication for Nuclear Configuration Interaction Calculations. IPDPS (2014)
Lin Lin, Chao Yang
Elliptic Preconditioner for Accelerating the Self-Consistent Field Iteration in Kohn-Sham Density Functional Theory. SIAM J. Sci. Comput. 35 (5) (2013)
Myoungsoo Jung, Ellis Herbert Wilson, Wonil Choi, John Shalf, Hasan Metin Aktulga, Chao Yang, Erik Saule, Ümit V. Çatalyürek, Mahmut T. Kandemir
Exploring the future of out-of-core computing with compute-local non-volatile memory. SC (2013)
Zheng Zhou, Erik Saule, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary, Ümit V. Çatalyürek
An Out-of-Core Dataflow Middleware to Reduce the Cost of Large Scale Iterative Solvers. ICPP Workshops (2012)
Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
Topology-Aware Mappings for Large-Scale Eigenvalue Problems. Euro-Par (2012)
Zheng Zhou, Erik Saule, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary, Ümit V. Çatalyürek
An Out-of-Core Eigensolver on SSD-equipped Clusters. CLUSTER (2012)
Lin Lin, Chao Yang, Jianfeng Lu, Lexing Ying, Weinan E
A Fast Parallel Algorithm for Selected Inversion of Structured Sparse Matrices with Application to 2D Electronic Structure Calculations. SIAM J. Sci. Comput. 33 (3) (2011)
Hasan Metin Aktulga, Chao Yang, Ümit V. Çatalyürek, Pieter Maris, James P. Vary, Esmond G. Ng
On Reducing I/O Overheads in Large-Scale Invariant Subspace Projections. Euro-Par Workshops (1) (2011)
Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
Large-scale parallel null space calculation for nuclear configuration interaction. HPCS (2011)
Esmond G. Ng, Jason Sarich, Stefan M. Wild, Todd S. Munson, Hasan Metin Aktulga, Chao Yang, Pieter Maris, James P. Vary, Nicolas Schunck, M. G. Bertolli, Markus Kortelainen, Witold Nazarewicz, Thomas Papenbrock, M. V. Stoitsov
Advancing Nuclear Physics Through TOPS Solvers and Tools CoRR (2011)
Lin Lin, Chao Yang, Juan C. Meza, Jianfeng Lu, Lexing Ying, Weinan E
SelInv - An Algorithm for Selected Inversion of a Sparse Symmetric Matrix. ACM Trans. Math. Softw. 37 (4) (2011)
Pieter Maris, Masha Sosonkina, James P. Vary, Esmond G. Ng, Chao Yang
Scaling of ab-initio nuclear physics calculations on multicore computer architectures. ICCS (1) (2010)
Julianne Chung, Philip Sternberg, Chao Yang
High-Performance Three-Dimensional Image Reconstruction for Molecular Structure Determination. Int. J. High Perform. Comput. Appl. 24 (2) (2010)
Chao Yang, Juan C. Meza, Byounghak Lee, Lin-Wang Wang
KSSOLV - a MATLAB toolbox for solving the Kohn-Sham equations. ACM Trans. Math. Softw. 36 (2) (2009)
Weiguo Gao, Xiaoye S. Li, Chao Yang, Zhaojun Bai
An Implementation and Evaluation of the AMLS Method for Sparse Eigenvalue Problems. ACM Trans. Math. Softw. 34 (4) (2008)
Chao Yang, Weiguo Gao, Juan C. Meza
On the Convergence of the Self-Consistent Field Iteration for a Class of Nonlinear Eigenvalue Problems. SIAM J. Matrix Anal. Appl. 30 (4) (2008)
Philip Sternberg, Esmond G. Ng, Chao Yang, Pieter Maris, James P. Vary, Masha Sosonkina, Hung Viet Le
Accelerating configuration interaction calculations for nuclear structure. SC (2008)
Chao Yang, Juan C. Meza, Lin-Wang Wang
A Trust Region Direct Constrained Minimization Algorithm for the Kohn-Sham Equation. SIAM J. Sci. Comput. 29 (5) (2007)
Chao Yang, Juan C. Meza, Lin-Wang Wang
A constrained optimization algorithm for total energy minimization in electronic structure calculations. J. Comput. Phys. 217 (2) (2006)
Chao Yang, Weiguo Gao, Zhaojun Bai, Xiaoye S. Li, Lie-Quan Lee, Parry Husbands, Esmond G. Ng
An Algebraic Substructuring Method for Large-Scale Eigenvalue Calculation. SIAM J. Sci. Comput. 27 (3) (2005)
Chao Yang, Esmond G. Ng, Pawel A. Penczek
Matrix-free constructions of circulant and block circulant preconditioners. Numer. Linear Algebra Appl. 11 (8-9) (2004)
Chao Yang, Weiguo Gao, Zhaojun Bai, Xiaoye S. Li, Lie-Quan Lee, Parry Husbands, Esmond G. Ng
Algebraic Sub-structuring for Electromagnetic Applications. PARA (2004)