Jianhua Ruan

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 17

Top Topics

Multiple Instance Learning

Systems Biology

Nearest Neighbor

Top Venues

BMC Syst. Biol.

Publications

Sakhawat Hossain Saimon, Tanzira Najnin, Jianhua Ruan
A Novel Feature Space Augmentation Method to Improve Classification Performance and Evaluation Reliability. KDD (2024)
Nahim Adnan, Maryam Zand, Tim Hui-Ming Huang, Jianhua Ruan
Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Nahim Adnan, Chengwei Lei, Jianhua Ruan
Robust edge-based biomarker discovery improves prediction of breast cancer metastasis. BMC Bioinform. (14) (2020)
Yu Yin, Shuai An, Jun Wang, Jinmao Wei, Jianhua Ruan
Probabilistic Margin-Aware Multi-Label Feature Selection by Preserving Spatial Consistency. IJCNN (2019)
Zhen Gao, Maryam Zand, Jianhua Ruan
A Novel Multiple Classifier Generation and Combination Framework Based on Fuzzy Clustering and Individualized Ensemble Construction. DSAA (2019)
Zhen Gao, Maryam Zand, Jianhua Ruan
A Novel Multiple Classifier Generation and Combination Framework Based on Fuzzy Clustering and Individualized Ensemble Construction. CoRR (2019)
Hengpeng Xu, Jinmao Wei, Zhenglu Yang, Jianhua Ruan, Jun Wang
Probabilistic Topic and Role Model for Information Diffusion in Social Network. PAKDD (2) (2018)
Xuemeng Jiang, Jun Wang, Jinmao Wei, Jianhua Ruan, Gang Yu
ANNC: AUC-Based Feature Selection by Maximizing Nearest Neighbor Complementarity. PRICAI (1) (2018)
Yuanyuan Xu, Jun Wang, Shuai An, Jinmao Wei, Jianhua Ruan
Semi-Supervised Multi-Label Feature Selection by Preserving Feature-Label Space Consistency. CIKM (2018)
Maryam Zand, Zhen Gao, Jinmao Wei, Garry Sunter, Jianhua Ruan
An integrative approach to transcriptional co-regulatory network construction and characterization in Arabidopsis. ICCABS (2018)
Xiaoming Liu, Lei Xie, Zhijin Wu, Kai Wang, Zhongming Zhao, Jianhua Ruan, Degui Zhi
The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications. BMC Bioinform. (17) (2018)
Zhen Gao, Jianhua Ruan
Computational modeling of in vivo and in vitro protein-DNA interactions by multiple instance learning. Bioinform. 33 (14) (2017)
W. Jim Zheng, Jianhua Ruan, Hua Xu, Zhongming Zhao, Zhangdong Liu
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: putting systems biology to work. BMC Syst. Biol. 11 (S-5) (2017)
Zhandong Liu, W. Jim Zheng, Genevera I. Allen, Yin Liu, Jianhua Ruan, Zhongming Zhao
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools. BMC Bioinform. 18 (S-11) (2017)
Lu Liu, Jianhua Ruan
Utilizing networks for differential analysis of chromatin interactions. J. Bioinform. Comput. Biol. 15 (6) (2017)
Md. Jamiul Jahid, Jianhua Ruan
Structure-based prediction of drug side effects using a novel classification algorithm. Int. J. Comput. Biol. Drug Des. 9 (1/2) (2016)
Zhongming Zhao, Yunlong Liu, Yufei Huang, Kun Huang, Jianhua Ruan
Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine (ICIBM) 2015. BMC Syst. Biol. 10 (S-3) (2016)
Md. Jamiul Jahid, Tim Hui-Ming Huang, Jianhua Ruan
A personalized committee classification approach to improving prediction of breast cancer metastasis. Bioinform. 30 (13) (2014)
Zhen Gao, Ruizhe Zhao, Jianhua Ruan
A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks. BMC Genom. 14 (S-1) (2013)
Chengwei Lei, Jianhua Ruan
A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity. Bioinform. 29 (3) (2013)
Md. Jamiul Jahid, Jianhua Ruan
An ensemble approach for drug side effect prediction. BIBM (2013)
Lu Liu, Jianhua Ruan
Network-based pathway enrichment analysis. BIBM (2013)
Zhen Gao, Jianhua Ruan
A structure-based approach to predicting in vitro transcription factor-DNA interaction. GENSiPS (2013)
Chengwei Lei, Jianhua Ruan
A random walk based approach for improving protein-protein interaction network and protein complex prediction. BIBM (2012)
Jianhua Ruan, Md. Jamiul Jahid, Fei Gu, Chengwei Lei, Yi-Wen Huang, Ya-Ting Hsu, David G. Mutch, Chun-Liang Chen, Nameer B. Kirma, Tim Hui-Ming Huang
Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data. BCB (2012)
Zhen Gao, Ruizhe Zhao, Jianhua Ruan
A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks. RACS (2012)
Saleh Tamim, Jianhua Ruan
Functional evaluation and analysis of predicted miRNA-mRNA regulatory network. RACS (2012)
Md. Jamiul Jahid, Jianhua Ruan
A novel approach for cancer outcome prediction using personalized classifier. RACS (2012)
Md. Jamiul Jahid, Jianhua Ruan
Identification of biomarkers in breast cancer metastasis by integrating protein-protein interaction network and gene expression data. GENSiPS (2011)
Jianhua Ruan, Joseph Perez, Brian Hernandez, Chengwei Lei, Garry Sunter, Valerie M. Sponsel
Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana. BMC Bioinform. 12 (S-12) (2011)
Chengwei Lei, Jianhua Ruan
Finding Gapped Motifs by a Novel Evolutionary Algorithm. EvoBIO (2010)
Jianhua Ruan, Angela K. Dean, Weixiong Zhang
A general co-expression network-based approach to gene expression analysis: comparison and applications. BMC Syst. Biol. 4 (2010)
Amy M. Wiles, Mark Doderer, Jianhua Ruan, Tingting Gu, Ravi Dashnamoorthy, Barron Blackman, Alexander J. R. Bishop
Building and analyzing protein interactome networks by cross-species comparisons. BMC Syst. Biol. 4 (2010)
Chengwei Lei, Jianhua Ruan
A particle swarm optimization-based algorithm for finding gapped motifs. BioData Min. 3 (2010)
Xuefeng Zhou, Jianhua Ruan, Weixiong Zhang
Promoter prediction based on a multiple instance learning scheme. BCB (2010)
Chengwei Lei, Jianhua Ruan
A novel swarm intelligence algorithm for finding DNA motifs. Int. J. Comput. Biol. Drug Des. 2 (4) (2009)
Angela K. Dean, Stephen E. Harris, Ivo Kalajzic, Jianhua Ruan
A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes. BMC Bioinform. 10 (S-9) (2009)
Jianhua Ruan
A Fully Automated Method for Discovering Community Structures in High Dimensional Data. ICDM (2009)
Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang
Characterization and Identification of MicroRNA Core Promoters in Four Model Species. PLoS Comput. Biol. 3 (3) (2007)
Jianhua Ruan, Weixiong Zhang
An Efficient Spectral Algorithm for Network Community Discovery and Its Applications to Biological and Social Networks. ICDM (2007)
Jianhua Ruan, Weixiong Zhang
Identification and Evaluation of Functional Modules in Gene Co-expression Networks. Systems Biology and Computational Proteomics (2006)
Jianhua Ruan, Weixiong Zhang
A bi-dimensional regression tree approach to the modeling of gene expression regulation. Bioinform. 22 (3) (2006)
Jianhua Ruan, Weixiong Zhang
Identification and Evaluation of Weak Community Structures in Networks. AAAI (2006)
Jianhua Ruan, Weixiong Zhang
CAGER: classification analysis of gene expression regulation using multiple information sources. BMC Bioinform. 6 (2005)
Weixiong Zhang, Jianhua Ruan, Tuan-hua David Ho, Youngsook You, Taotao Yu, Ralph S. Quatrano
. Bioinform. 21 (14) (2005)
Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang
. Systems Biology and Regulatory Genomics (2005)
Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. Bioinform. 20 (1) (2004)
Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
ILM: a web server for predicting RNA secondary structures with pseudoknots. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru. CSB (2003)