Shili Lin

Publication Activity (10 Years)

Years Active: 1997-2024
Publications (10 Years): 9

Top Topics

Statistical Methods

Linkage Disequilibrium

Gene Gene Interactions

Top Venues

Briefings Bioinform.

J. Comput. Biol.

Publications

Shili Lin, Cheng Chen, Gaoju Liang, Xianyong Zhang, Sheng Li
Hybrid energy storage system and its hardware-in-loop platform for 1500-V metro DC power supply system based on voltage droop control. Int. J. Circuit Theory Appl. 52 (4) (2024)
Qing Xie, Chenggong Han, Victor Jin, Shili Lin
HiCImpute: A Bayesian hierarchical model for identifying structural zeros and enhancing single cell Hi-C data. PLoS Comput. Biol. 18 (6) (2022)
Chenggong Han, Qing Xie, Shili Lin
Are dropout imputation methods for scRNA-seq effective for scHi-C data? Briefings Bioinform. 22 (4) (2021)
Yanhui Zhang, Shili Lin, Haiping Ma, Yuanjun Guo, Wei Feng
A Novel Pigeon-Inspired Optimized RBF Model for Parallel Battery Branch Forecasting. Complex. 2021 (2021)
Jincheol Park, Shili Lin
Evaluation and comparison of methods for recapitulation of 3D spatial chromatin structures. Briefings Bioinform. 20 (4) (2019)
Jie Lv, Wenji Song, Shili Lin, Ziping Feng, Yulong Ding, Yongliang Li
Investigation on dynamic equalisation performance of lithium battery pack management. IET Circuits Devices Syst. 11 (4) (2017)
Deepak Nag Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan, Shili Lin
Statistical methods for detecting differentially methylated regions based on MethylCap-seq data. Briefings Bioinform. 17 (6) (2016)
Jincheol Park, Shili Lin
Impact of data resolution on three-dimensional structure inference methods. BMC Bioinform. 17 (2016)
Zhenqiu Liu, Shili Lin, Nan Deng, Dermot P. B. McGovern, Steven T. Piantadosi
Penalty for Network Construction with Omics Data. J. Comput. Biol. 23 (3) (2016)
Deepak Nag Ayyala, Shili Lin
GrammR: graphical representation and modeling of count data with application in metagenomics. Bioinform. 31 (10) (2015)
Zhenqiu Liu, Shili Lin, Steven T. Piantadosi
Network construction and structure detection with metagenomic count data. BioData Min. 8 (2015)
Meng Wang, Shili Lin
Detecting associations of rare variants with common diseases: collapsing or haplotyping? Briefings Bioinform. 16 (5) (2015)
David E. Frankhouser, Mark Murphy, James S. Blachly, Jincheol Park, Mike W. Zoller, Javkhlan-Ochir Ganbat, John Curfman, John C. Byrd, Shili Lin, Guido Marcucci, Pearlly Yan, Ralf Bundschuh
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data. Bioinform. 30 (24) (2014)
Meng Wang, Shili Lin
FamLBL: detecting rare haplotype disease association based on common SNPs using case-parent triads. Bioinform. 30 (18) (2014)
Cenny Taslim, Shili Lin
A Mixture Modeling Framework for Differential Analysis of High-Throughput Data. Comput. Math. Methods Medicine 2014 (2014)
Cenny Taslim, Tim Hui-Ming Huang, Shili Lin
DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models. Bioinform. 27 (11) (2011)
Shuying Sun, Yi-Wen Huang, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
Preprocessing differential methylation hybridization microarray data. BioData Min. 4 (2011)
Cenny Taslim, Shili Lin, Kun Huang, Tim Hui-Ming Huang
Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model. GENSiPS (2011)
Shuying Sun, Zhengyi Chen, Pearlly Yan, Yi-Wen Huang, Tim Hui-Ming Huang, Shili Lin
Identifying hypermethylated CpG islands using a quantile regression model. BMC Bioinform. 12 (2011)
Zhenqiu Liu, Shili Lin, Ming Tan
Sparse Support Vector Machines with L_{p} Penalty for Biomarker Identification. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (1) (2010)
Abbas Khalili, Tim Hui-Ming Huang, Shili Lin
A robust unified approach to analyzing methylation and gene expression data. Comput. Stat. Data Anal. 53 (5) (2009)
Shuying Sun, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
Identifying differentially methylated genes using mixed effect and generalized least square models. BMC Bioinform. 10 (2009)
Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang
Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinform. 25 (18) (2009)
Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin
Probe signal correction for differential methylation hybridization experiments. BMC Bioinform. 9 (2008)
Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinform. 8 (2007)
Zhenqiu Liu, Shili Lin, Ming Tan
Genome-Wide Tagging SNPs with Entropy-Based Monte Carlo Method. J. Comput. Biol. 13 (9) (2006)
Roxana Alexandridis, Shili Lin, Mark Irwin
Class discovery and classification of tumor samples using mixture modeling of gene expression data - a unified approach. Bioinform. 20 (16) (2004)
Shili Lin, Terence P. Speed
An algorithm for haplotype analysis. RECOMB (1997)
Shili Lin, Terence P. Speed
An Algorithm for Haplotype Analysis. J. Comput. Biol. 4 (4) (1997)