Hongkai Ji

Publication Activity (10 Years)

Years Active: 2001-2022
Publications (10 Years): 4

Top Topics

Saccharomyces Cerevisiae

Gene Expression

Pearson Correlation

Top Venues

Genom. Proteom. Bioinform.

PLoS Comput. Biol.

Publications

Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu
EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing. Bioinform. 38 (10) (2022)
Sarthak Sinha, Ansuman T. Satpathy, Weiqiang Zhou, Hongkai Ji, Jo A. Stratton, Arzina Jaffer, Nizar Bahlis, Sorana Morrissy, Jeff A. Biernaskie
Profiling Chromatin Accessibility at Single-cell Resolution. Genom. Proteom. Bioinform. 19 (2) (2021)
Zhicheng Ji, Weiqiang Zhou, Hongkai Ji
Single-cell regulome data analysis by SCRAT. Bioinform. 33 (18) (2017)
Jie Wang, Shuli Xia, Brian Arand, Heng Zhu, Raghu Machiraju, Kun Huang, Hongkai Ji, Jiang Qian
Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes. PLoS Comput. Biol. 12 (4) (2016)
George Wu, Hongkai Ji
ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking. BMC Bioinform. 14 (2013)
George Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji
ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data. Bioinform. 29 (9) (2013)
Andrew E. Jaffe, John D. Storey, Hongkai Ji, Jeffrey T. Leek
Gene set bagging for estimating the probability a statistically significant result will replicate. BMC Bioinform. 14 (2013)
Yingying Wei, Xia Li, Qianfei Wang, Hongkai Ji
iASeq: integrating multiple chip-seq datasets for detecting allele-specific binding. BMC Bioinform. 13 (S-18) (2012)
Li Chen, George Wu, Hongkai Ji
hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data. Bioinform. 27 (10) (2011)
Hao Wu, Hongkai Ji
JAMIE: joint analysis of multiple ChIP-chip experiments. Bioinform. 26 (15) (2010)
Jennifer Toolan Judy, Hongkai Ji
TileProbe: modeling tiling array probe effects using publicly available data. Bioinform. 25 (18) (2009)
Ryung S. Kim, Hongkai Ji, Wing Hung Wong
An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse. BMC Bioinform. 7 (2006)
Hongkai Ji, Wing Hung Wong
TileMap: create chromosomal map of tiling array hybridizations. Bioinform. 21 (18) (2005)
Hongkai Ji, Qing Zhou, Fang Wen, Huiyu Xia, Xin Lu, Yanda Li
AsMamDB: an alternative splice database of mammals. Nucleic Acids Res. 29 (1) (2001)