Andrew E. Jaffe

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 7

Top Topics

Top Venues

Publications

Nicholas J. Eagles, Richard Wilton, Andrew E. Jaffe, Leonardo Collado-Torres
BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data. BMC Bioinform. 24 (1) (2023)
Tathagata Banerjee, Matthew Kollada, Pablo Gersberg, Oscar Rodriguez, Jane Tiller, Andrew E. Jaffe, John Reynders
Predicting Mood Disorder Symptoms with Remotely Collected Videos Using an Interpretable Multimodal Dynamic Attention Fusion Network. CoRR (2021)
Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres
Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses. BMC Bioinform. 22 (1) (2021)
Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. BMC Bioinform. 22 (1) (2021)
Claudia Giambartolomei, Jimmy Zhenli Liu, Wen Zhang, Mads Hauberg, Huwenbo Shi, James Boocock, Joe Pickrell, Andrew E. Jaffe, The CommonMind Consortium, Bogdan Pasaniuc, Panos Roussos
A Bayesian framework for multiple trait colocalization from summary association statistics. Bioinform. 34 (15) (2018)
Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead
Rail-RNA: scalable analysis of RNA-seq splicing and coverage. Bioinform. 33 (24) (2017)
Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel R. Weinberger, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni
Erratum to: Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. BMC Bioinform. 17 (2016)
Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel Weinbergern, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni
Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis. BMC Bioinform. 16 (2015)
Alyssa C. Frazee, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek
: simulating RNA-seq datasets with differential transcript expression. Bioinform. 31 (17) (2015)
Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek
regionReport: Interactive reports for region-based analyses. F1000Research 4 (2015)
Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd-Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. Bioinform. 30 (10) (2014)
Andrew E. Jaffe, John D. Storey, Hongkai Ji, Jeffrey T. Leek
Gene set bagging for estimating the probability a statistically significant result will replicate. BMC Bioinform. 14 (2013)
Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker, Andrew E. Jaffe, John D. Storey
The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinform. 28 (6) (2012)