Martin J. Aryee

Publication Activity (10 Years)

Years Active: 2009-2019
Publications (10 Years): 2

Top Topics

Quality Control

Computational Framework

Top Venues

BMC Syst. Biol.

Publications

Divy Kangeyan, Andrew J. Dunford, Sowmya Iyer, Chip Stewart, Megan Hanna, Gad Getz, Martin J. Aryee
A (fire)cloud-based DNA methylation data preprocessing and quality control platform. BMC Bioinform. 20 (1) (2019)
Caleb A. Lareau, Martin J. Aryee
diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data. Bioinform. 34 (4) (2018)
Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd-Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays. Bioinform. 30 (10) (2014)
David M. Simcha, Laurent Younes, Martin J. Aryee, Donald Geman
Identification of direction in gene networks from expression and methylation. BMC Syst. Biol. 7 (2013)
Thomas W. Chittenden, Eleanor Howe, Jennifer M. Taylor, Jessica C. Mar, Martin J. Aryee, Harold Gómez, Razvan Sultana, John C. Braisted, Sarita J. Nair, John Quackenbush, Chris Holmes
nEASE: a method for gene ontology subclassification of high-throughput gene expression data. Bioinform. 28 (5) (2012)
Zhijin Wu, Martin J. Aryee
Subset Quantile Normalization Using Negative Control Features. J. Comput. Biol. 17 (10) (2010)
Martin J. Aryee, José A. Gutiérrez-Pabello, Igor Kramnik, Tapabrata Maiti, John Quackenbush
An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation). BMC Bioinform. 10 (2009)