John C. Braisted

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 3

Top Topics

Biological Entities

Top Venues

J. Cheminformatics

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

John C. Braisted, Andrew Patt, Cole Tindall, Timothy Sheils, Jorge Neyra, Kyle Spencer, Tara Eicher, Ewy A Mathé
RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes. Bioinform. 39 (1) (2023)
Bryan Queme, John C. Braisted, Patricia Dranchak, James Inglese
qHTSWaterfall: 3-dimensional visualization software for quantitative high-throughput screening (qHTS) data. J. Cheminformatics 15 (1) (2023)
Gregory J. Tawa, John C. Braisted, David Gerhold, Gurmit Grewal, Christina Mazcko, Matthew Breen, Gurusingham Sittampalam, Amy K. LeBlanc
Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species. PLoS Comput. Biol. 17 (9) (2021)
E. A. Howe, Andrea de Souza, David L. Lahr, S. Chatwin, Philip Montgomery, B. R. Alexander, Dac-Trung Nguyen, Yasel Cruz, D. A. Stonich, G. Walzer, J. T. Rose, S. C. Picard, Zihan Liu, Jamie N. Rose, X. Xiang, Jacob K. Asiedu, D. Durkin, J. Levine, J. J. Yang, Stephan C. Schürer, John C. Braisted, Noel Southall, Mark R. Southern, T. D. Y. Chung, Steve Brudz, C. Tanega, Stuart L. Schreiber, Joshua A. Bittker, Rajarshi Guha, Paul A. Clemons
BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types. Nucleic Acids Res. 43 (Database-Issue) (2015)
Thomas W. Chittenden, Eleanor Howe, Jennifer M. Taylor, Jessica C. Mar, Martin J. Aryee, Harold Gómez, Razvan Sultana, John C. Braisted, Sarita J. Nair, John Quackenbush, Chris Holmes
nEASE: a method for gene ontology subclassification of high-throughput gene expression data. Bioinform. 28 (5) (2012)
John C. Braisted, Srilatha Kuntumalla, Christine Vogel, Edward M. Marcotte, Alan R. Rodrigues, Rong Wang, Shih-Ting Huang, Erik S. Ferlanti, Alexander I. Saeed, Robert D. Fleischmann, Scott N. Peterson, Rembert Pieper
The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results. BMC Bioinform. 9 (2008)