W. Evan Johnson

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 5

Top Topics

Individual Classifiers

Empirical Bayes

Top Venues

Publications

Yichen Wang, Irzam Sarfraz, Nida Pervaiz, Rui Hong, Yusuke Koga, Vidya Akavoor, Xinyun Cao, Salam Alabdullatif, Syed Ali Zaib, Zhe Wang, Frederick Jansen, Masanao Yajima, W. Evan Johnson, Joshua D. Campbell
Interactive analysis of single-cell data using flexible workflows with SCTK2. Patterns 4 (8) (2023)
Yuqing Zhang, Prasad Patil, W. Evan Johnson, Giovanni Parmigiani
Robustifying genomic classifiers to batch effects via ensemble learning. Bioinform. 37 (11) (2021)
Zhe Wang, Junming Hu, W. Evan Johnson, Joshua D. Campbell
scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data. BMC Bioinform. 20 (1) (2019)
Yuqing Zhang, David F. Jenkins, Solaiappan Manimaran, W. Evan Johnson
Alternative empirical Bayes models for adjusting for batch effects in genomic studies. BMC Bioinform. 19 (1) (2018)
Solaiappan Manimaran, Heather Selby, Kwame Okrah, Claire Ruberman, Jeffrey T. Leek, John Quackenbush, Benjamin Haibe-Kains, Héctor Corrada Bravo, W. Evan Johnson
BatchQC: interactive software for evaluating sample and batch effects in genomic data. Bioinform. 32 (24) (2016)
Ying Shen, Mumtahena Rahman, Stephen R. Piccolo, Daniel Gusenleitner, Nader N. El-Chaar, Luis Cheng, Stefano Monti, Andrea H. Bild, W. Evan Johnson
ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways. Bioinform. 31 (11) (2015)
Mumtahena Rahman, Laurie K. Jackson, W. Evan Johnson, Dean Y. Li, Andrea H. Bild, Stephen R. Piccolo
Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results. Bioinform. 31 (22) (2015)
Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker, Andrew E. Jaffe, John D. Storey
The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinform. 28 (6) (2012)
Nathan L. Clement, Brent A. Shepherd, Paul M. Bodily, Sukhbat Tumur-Ochir, Younghoon Gim, Quinn Snell, Mark J. Clement, W. Evan Johnson
Parallel Pair-HMM SNP Detection. IPDPS Workshops (2012)
Nathan L. Clement, Mark J. Clement, Quinn Snell, W. Evan Johnson
Parallel Mapping Approaches for GNUMAP. IPDPS Workshops (2011)
Nathan L. Clement, Quinn Snell, Mark J. Clement, Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. Bioinform. 26 (1) (2010)