Leonardo Collado-Torres

Publication Activity (10 Years)

Years Active: 2011-2023
Publications (10 Years): 9

Top Topics

Indexing Techniques

Escherichia Coli

Top Venues

Nucleic Acids Res.

Publications

Sonia García-Ruíz, Emil K. Gustavsson, David Zhang, Regina H. Reynolds, Zhongbo Chen, Aine Fairbrother-Browne, Ana Luisa Gil-Martínez, Juan A Botia, Leonardo Collado-Torres, Mina Ryten
IntroVerse: a comprehensive database of introns across human tissues. Nucleic Acids Res. 51 (D1) (2023)
Nicholas J. Eagles, Richard Wilton, Andrew E. Jaffe, Leonardo Collado-Torres
BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data. BMC Bioinform. 24 (1) (2023)
Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor. Bioinform. 38 (11) (2022)
Christopher Wilks, Omar Ahmed, Daniel N. Baker, David Zhang, Leonardo Collado-Torres, Ben Langmead
Megadepth: efficient coverage quantification for BigWigs and BAMs. Bioinform. 37 (18) (2021)
Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres
Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses. BMC Bioinform. 22 (1) (2021)
Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. BMC Bioinform. 22 (1) (2021)
Joselyn Chávez, Carmina Barberena-Jonas, Jesus E. Sotelo-Fonseca, José Alquicira-Hernández, Heladia Salgado, Leonardo Collado-Torres, Alejandro Reyes
Programmatic access to bacterial regulatory networks with regutools. Bioinform. 36 (16) (2020)
Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead
Rail-RNA: scalable analysis of RNA-seq splicing and coverage. Bioinform. 33 (24) (2017)
Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek
regionReport: Interactive reports for region-based analyses. F1000Research 4 (2015)
Socorro Gama-Castro, Heladia Salgado, Martín Peralta-Gil, Alberto Santos-Zavaleta, Luis Muñiz-Rascado, Hilda Solano-Lira, Verónica Jiménez-Jacinto, Verena Weiss, Jair S. García-Sotelo, Alejandra López-Fuentes, Liliana Porrón-Sotelo, Shirley Alquicira-Hernández, Alejandra Medina-Rivera, Irma Martínez-Flores, Kevin Alquicira-Hernández, Ruth Martínez-Adame, César Bonavides-Martínez, Juan Miranda-Ríos, Araceli M. Huerta, Alfredo Mendoza-Vargas, Leonardo Collado-Torres, Blanca Taboada, Leticia Vega-Alvarado, Maricela Olvera, Leticia Olvera, Ricardo Grande, Enrique Morett, Julio Collado-Vides
K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Res. 39 (Database-Issue) (2011)