Aaron T. L. Lun

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 9

Top Topics

Interactive Video

Biological Data

Gene Expression

Metabolic Networks

Top Venues

J. Open Source Softw.

Publications

Aaron T. L. Lun, Jayaram Kancherla
Powering single-cell analyses in the browser with WebAssembly. J. Open Source Softw. 8 (90) (2023)
Aaron T. L. Lun, Jayaram Kancherla
gesel: a JavaScript package for client-side gene set enrichment. J. Open Source Softw. 8 (91) (2023)
Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor. Bioinform. 38 (11) (2022)
Aaron T. L. Lun
basilisk: a Bioconductor package for managing Python environments. J. Open Source Softw. 7 (79) (2022)
Aaron T. L. Lun, Hervé Pagès, Mike L. Smith
beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types. PLoS Comput. Biol. 14 (5) (2018)
Kevin C. Rue-Albrecht, Federico Marini, Charlotte Soneson, Aaron T. L. Lun
iSEE: Interactive SummarizedExperiment Explorer. F1000Research 7 (2018)
Davis J. McCarthy, Kieran R. Campbell, Aaron T. L. Lun, Quin F. Wills
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R. Bioinform. 33 (8) (2017)
Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline. F1000Research 5 (2016)
Aaron T. L. Lun, Malcolm Perry, Elizabeth Ing-Simmons
Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments. F1000Research 5 (2016)
Aaron T. L. Lun, Gordon K. Smyth
diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data. BMC Bioinform. 16 (2015)
Aaron T. L. Lun, Jason W. H. Wong, Kevin M. Downard
FluShuffle and FluResort: new algorithms to identify reassorted strains of the influenza virus by mass spectrometry. BMC Bioinform. 13 (2012)