Gordon K. Smyth

Publication Activity (10 Years)

Years Active: 1991-2023
Publications (10 Years): 4

Top Topics

General Purpose

Missing Data Imputation

Top Venues

Publications

Mengbo Li, Gordon K. Smyth
Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics. Bioinform. 39 (5) (2023)
Yunshun Chen, Bhupinder Pal, Jane E. Visvader, Gordon K. Smyth
Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR. F1000Research 6 (2017)
Yunshun Chen, Aaron T. L. Lun, Gordon K. Smyth
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline. F1000Research 5 (2016)
Göknur Giner, Gordon K. Smyth
statmod: Probability Calculations for the Inverse Gaussian Distribution. R J. 8 (1) (2016)
Aaron T. L. Lun, Gordon K. Smyth
diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data. BMC Bioinform. 16 (2015)
Yang Liao, Gordon K. Smyth, Wei Shi
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinform. 30 (7) (2014)
Gordon K. Smyth, Naomi S. Altman
Separate-channel analysis of two-channel microarrays: recovering inter-spot information. BMC Bioinform. 14 (2013)
Di Wu, Elgene Lim, François Vaillant, Marie-Liesse Asselin-Labat, Jane E. Visvader, Gordon K. Smyth
ROAST: rotation gene set tests for complex microarray experiments. Bioinform. 26 (17) (2010)
Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth
: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinform. 26 (1) (2010)
Wei Shi, Ashish Banerjee, Matthew E. Ritchie, Steve Gerondakis, Gordon K. Smyth
Illumina WG-6 BeadChip strips should be normalized separately. BMC Bioinform. 10 (2009)
Davis J. McCarthy, Gordon K. Smyth
Testing significance relative to a fold-change threshold is a TREAT. Bioinform. 25 (6) (2009)
Peter K. Dunn, Gordon K. Smyth
Evaluation of Tweedie exponential dispersion model densities by Fourier inversion. Stat. Comput. 18 (1) (2008)
Alicia Oshlack, Adrien E. Chabot, Gordon K. Smyth, Yoav Gilad
Using DNA microarrays to study gene expression in closely related species. Bioinform. 23 (10) (2007)
Matthew E. Ritchie, Jeremy David Silver, Alicia Oshlack, Melissa Holmes, Dileepa S. Diyagama, Andrew J. Holloway, Gordon K. Smyth
A comparison of background correction methods for two-colour microarrays. Bioinform. 23 (20) (2007)
Mark D. Robinson, Gordon K. Smyth
Moderated statistical tests for assessing differences in tag abundance. Bioinform. 23 (21) (2007)
Matthew E. Ritchie, Dileepa S. Diyagama, Jody Neilson, Ryan van Laar, Alexander Dobrovic, Andrew J. Holloway, Gordon K. Smyth
Empirical array quality weights in the analysis of microarray data. BMC Bioinform. 7 (2006)
Andrew J. Holloway, Alicia Oshlack, Dileepa S. Diyagama, David D. L. Bowtell, Gordon K. Smyth
Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis. BMC Bioinform. 7 (2006)
James M. Wettenhall, Ken M. Simpson, Keith Satterley, Gordon K. Smyth
affylmGUI: a graphical user interface for linear modeling of single channel microarray data. Bioinform. 22 (7) (2006)
Gordon K. Smyth, Joëlle Michaud, Hamish S. Scott
Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinform. 21 (9) (2005)
Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson
A systematic approach for comprehensive T-cell epitope discovery using peptide libraries. ISMB (Supplement of Bioinformatics) (2005)
Peter K. Dunn, Gordon K. Smyth
Series evaluation of Tweedie exponential dispersion model densities. Stat. Comput. 15 (4) (2005)
James M. Wettenhall, Gordon K. Smyth
limmaGUI: A graphical user interface for linear modeling of microarray data. Bioinform. 20 (18) (2004)
Heather M. Podlich, Malcolm J. Faddy, Gordon K. Smyth
Semi-parametric extended Poisson process models for count data. Stat. Comput. 14 (4) (2004)
Gordon K. Smyth, Heather M. Podlich
An Improved Saddlepoint Approximation Based on the Negative Binomial Distribution for the General Birth Process. Comput. Stat. 17 (1) (2002)
Gordon K. Smyth
Employing Symmetry Constraints for Improved Frequency Estimation by Eigenanalysis Methods. Technometrics 42 (3) (2000)
Gordon K. Smyth
Partitioned algorithms for maximum likelihood and other non-linear estimation. Stat. Comput. 6 (3) (1996)
Michael R. Osborne, Gordon K. Smyth
A Modified Prony Algorithm for Exponential Function Fitting. SIAM J. Sci. Comput. 16 (1) (1995)
Michael R. Osborne, Gordon K. Smyth
A Modified Prony Algorithm for Fitting Functions Defined by Difference Equations. SIAM J. Sci. Comput. 12 (2) (1991)