Charlotte Soneson

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 10

Top Topics

Differential Expression

Hierarchical Structure

Top Venues

PLoS Comput. Biol.

Publications

Charlotte Soneson, Vytautas Iesmantavicius, Daniel Hess, Michael B. Stadler, Jan Seebacher
einprot: flexible, easy-to-use, reproducible workflows for statistical analysis of quantitative proteomics data. J. Open Source Softw. 8 (90) (2023)
Charlotte Soneson, Avi Srivastava, Rob Patro, Michael B. Stadler
Preprocessing choices affect RNA velocity results for droplet scRNA-seq data. PLoS Comput. Biol. 17 (1) (2021)
Michael I. Love, Charlotte Soneson, Peter F. Hickey, Lisa K. Johnson, N. Tessa Pierce, Lori A. Shepherd, Martin Morgan, Rob Patro
Tximeta: Reference sequence checksums for provenance identification in RNA-seq. PLoS Comput. Biol. 16 (2) (2020)
Ruizhu Huang, Charlotte Soneson, Felix G. M. Ernst, Kevin C. Rue-Albrecht, Guangchuang Yu, Stephanie C. Hicks, Mark D. Robinson
TreeSummarizedExperiment: a S4 class for data with hierarchical structure. F1000Research 9 (2020)
Lukas M. Weber, Charlotte Soneson
HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats. F1000Research 8 (2019)
Angelo Duò, Mark D. Robinson, Charlotte Soneson
A systematic performance evaluation of clustering methods for single-cell RNA-seq data. F1000Research 7 (2018)
Charlotte Soneson, Mark D. Robinson
Towards unified quality verification of synthetic count data with countsimQC. Bioinform. 34 (4) (2018)
Kevin C. Rue-Albrecht, Federico Marini, Charlotte Soneson, Aaron T. L. Lun
iSEE: Interactive SummarizedExperiment Explorer. F1000Research 7 (2018)
Michael I. Love, Charlotte Soneson, Rob Patro
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification. F1000Research 7 (2018)
Kerstin Johnsson, Charlotte Soneson, Magnus Fontes
Low Bias Local Intrinsic Dimension Estimation from Expected Simplex Skewness. IEEE Trans. Pattern Anal. Mach. Intell. 37 (1) (2015)
Charlotte Soneson
compcodeR - an R package for benchmarking differential expression methods for RNA-seq data. Bioinform. 30 (17) (2014)
Charlotte Soneson, Magnus Fontes
Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings. Comput. Stat. Data Anal. 71 (2014)
Charlotte Soneson, Mauro Delorenzi
A comparison of methods for differential expression analysis of RNA-seq data. BMC Bioinform. 14 (2013)
Magnus Fontes, Charlotte Soneson
The projection score - an evaluation criterion for variable subset selection in PCA visualization. BMC Bioinform. 12 (2011)
Charlotte Soneson, Henrik Lilljebjörn, Thoas Fioretos, Magnus Fontes
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis. BMC Bioinform. 11 (2010)