Matthew N. McCall

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 7

Top Topics

Quality Control

Multiple Imputation

Top Venues

Briefings Bioinform.

Nucleic Acids Res.

Publications

Valeriia Sherina, Helene R. McMurray, Winslow Powers, Harmut Land, Tanzy M. T. Love, Matthew N. McCall
Correction: Multiple imputation and direct estimation for qPCR data with non-detects. BMC Bioinform. 25 (1) (2024)
Yun Zhang, Jonavelle Cuerdo, Marc K. Halushka, Matthew N. McCall
The effect of tissue composition on gene co-expression. Briefings Bioinform. 22 (1) (2021)
Matthew N. McCall, Chin-Yi Chu, Lu Wang, Lauren Benoodt, Juilee Thakar, Anthony Corbett, Jeanne Holden-Wiltse, Christopher Slaunwhite, Alex Grier, Steven R. Gill, Ann R. Falsey, David J. Topham, Mary T. Caserta, Edward E. Walsh, Xing Qiu, Thomas J. Mariani
A systems genomics approach uncovers molecular associates of RSV severity. PLoS Comput. Biol. 17 (12) (2021)
Benjamin Hsu, Valeriia Sherina, Matthew N. McCall
Autoregressive modeling and diagnostics for qPCR amplification. Bioinform. 36 (22-23) (2021)
Valeriia Sherina, Helene R. McMurray, Winslow Powers, Hartmut Land, Tanzy M. T. Love, Matthew N. McCall
Multiple imputation and direct estimation for qPCR data with non-detects. BMC Bioinform. 21 (1) (2020)
Lauren Kemperman, Matthew N. McCall
: Interactive assessment of qPCR-based microRNA quantification and quality control algorithms. F1000Research 6 (2017)
Matthew N. McCall, Alexander S. Baras, Alexander Crits-Christoph, Roxann Ingersoll, Melissa A. McAlexander, Kenneth W. Witwer, Marc K. Halushka
A benchmark for microRNA quantification algorithms using the OpenArray platform. BMC Bioinform. 17 (2016)
Matthew N. McCall, Harris A. Jaffee, Susan J. Zelisko, Neeraj Sinha, Guido J. E. K. Hooiveld, Rafael A. Irizarry, Michael J. Zilliox
The Gene Expression Barcode 3.0: improved data processing and mining tools. Nucleic Acids Res. 42 (Database-Issue) (2014)
Matthew N. McCall, Helene R. McMurray, Hartmut Land, Anthony Almudevar
On non-detects in qPCR data. Bioinform. 30 (16) (2014)
George Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji
ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data. Bioinform. 29 (9) (2013)
Matthew N. McCall, Anthony Almudevar
Affymetrix GeneChip microarray preprocessing for multivariate analyses. Briefings Bioinform. 13 (5) (2012)
Matthew N. McCall, Harris A. Jaffee, Rafael A. Irizarry
fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays. Bioinform. 28 (23) (2012)
Héctor Corrada Bravo, Vasyl Pihur, Matthew N. McCall, Rafael A. Irizarry, Jeffrey T. Leek
Gene expression anti-profiles as a basis for accurate universal cancer signatures. BMC Bioinform. 13 (2012)
Matthew N. McCall, Peter N. Murakami, Margus Lukk, Wolfgang Huber, Rafael A. Irizarry
Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples. BMC Bioinform. 12 (2011)
Matthew N. McCall, Rafael A. Irizarry
Thawing Frozen Robust Multi-array Analysis (fRMA). BMC Bioinform. 12 (2011)
Matthew N. McCall, Karan Uppal, Harris A. Jaffee, Michael J. Zilliox, Rafael A. Irizarry
The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes. Nucleic Acids Res. 39 (Database-Issue) (2011)