Arthur J. Olson

Publication Activity (10 Years)

Years Active: 1981-2022
Publications (10 Years): 11

Top Topics

Visual Analytics

Virtual Screening

Top Venues

J. Chem. Inf. Model.

J. Comput. Aided Mol. Des.

IEEE Computer Graphics and Applications

Comput. Graph. Forum

Publications

Qinfang Sun, Avik Biswas, R. S. K. Vijayan, Pierrick Craveur, Stefano Forli, Arthur J. Olson, Andres Emanuelli Castaner, Karen Kirby, Stefan G. Sarafianos, Nan-Jie Deng, Ronald M. Levy
Structure-based virtual screening workflow to identify antivirals targeting HIV-1 capsid. J. Comput. Aided Mol. Des. 36 (3) (2022)
Adam Gardner, Ludovic Autin, Daniel Fuentes, Martina Maritan, Benjamin A. Barad, Michaela Medina, Arthur J. Olson, Danielle A. Grotjahn, David S. Goodsell
CellPAINT: Turnkey Illustration of Molecular Cell Biology. Frontiers Bioinform. 1 (2021)
Ludovic Autin, Martina Maritan, Brett A. Barbaro, Adam Gardner, Arthur J. Olson, Michel F. Sanner, David S. Goodsell
Mesoscope: A Web-based Tool for Mesoscale Data Integration and Curation. MolVa@Eurographics/EuroVis (2020)
Nicholas Waldin, Manuela Waldner, Mathieu Le Muzic, M. Eduard Gröller, David S. Goodsell, Ludovic Autin, Arthur J. Olson, Ivan Viola
Cuttlefish: Color Mapping for Dynamic Multi-Scale Visualizations. Comput. Graph. Forum 38 (6) (2019)
David Kouril, Ladislav Cmolík, Barbora Kozlíková, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments. IEEE Trans. Vis. Comput. Graph. 25 (1) (2019)
David S. Goodsell, Andrew Jewett, Arthur J. Olson, Stefano Forli
Integrative modeling of the HIV-1 ribonucleoprotein complex. PLoS Comput. Biol. 15 (6) (2019)
Junchao Xia, William F. Flynn, Emilio Gallicchio, Keith Uplinger, Jonathan D. Armstrong, Stefano Forli, Arthur J. Olson, Ronald M. Levy
Massive-Scale Binding Free Energy Simulations of HIV Integrase Complexes Using Asynchronous Replica Exchange Framework Implemented on the IBM WCG Distributed Network. J. Chem. Inf. Model. 59 (4) (2019)
Tobias Klein, Peter Mindek, Ludovic Autin, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
Parallel Generation and Visualization of Bacterial Genome Structures. Comput. Graph. Forum 38 (7) (2019)
Tobias Klein, Ludovic Autin, Barbora Kozlíková, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
Instant Construction and Visualization of Crowded Biological Environments. IEEE Trans. Vis. Comput. Graph. 24 (1) (2018)
Adam Gardner, Ludovic Autin, Brett Barbaro, Arthur J. Olson, David S. Goodsell
CellPAINT: Interactive Illustration of Dynamic Mesoscale Cellular Environments. IEEE Computer Graphics and Applications 38 (6) (2018)
Richard K. Belew, Stefano Forli, David S. Goodsell, T. J. O'Donnell, Arthur J. Olson
Fragment-Based Analysis of Ligand Dockings Improves Classification of Actives. J. Chem. Inf. Model. 56 (8) (2016)
Alexander L. Perryman, Weixuan Yu, Xin Wang, Sean Ekins, Stefano Forli, Shao-Gang Li, Joel S. Freundlich, Peter J. Tonge, Arthur J. Olson
InhA. J. Chem. Inf. Model. 55 (3) (2015)
Pradeep Anand Ravindranath, Stefano Forli, David S. Goodsell, Arthur J. Olson, Michel F. Sanner
: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility. PLoS Comput. Biol. 11 (12) (2015)
Jodi L. Davenport, Matt Silberglitt, Jon Boxerman, Arthur J. Olson
Identifying Affordances of 3D Printed Tangible Models for Understanding Core Biological Concepts. ICLS (2014)
David L. Mobley, Shuai Liu, Nathan M. Lim, Karisa L. Wymer, Alexander L. Perryman, Stefano Forli, Nan-Jie Deng, Justin Su, Kim Branson, Arthur J. Olson
Blind prediction of HIV integrase binding from the SAMPL4 challenge. J. Comput. Aided Mol. Des. 28 (4) (2014)
Alexander L. Perryman, Daniel N. Santiago, Stefano Forli, Diogo Santos-Martins, Arthur J. Olson
Virtual screening with AutoDock Vina and the common pharmacophore engine of a low diversity library of fragments and hits against the three allosteric sites of HIV integrase: participation in the SAMPL4 protein-ligand binding challenge. J. Comput. Aided Mol. Des. 28 (4) (2014)
Raghu Machiraju, Carsten Görg, Arthur J. Olson
Visual Analytics for Biological Data. IEEE Computer Graphics and Applications 34 (2) (2014)
Emilio Gallicchio, Nan-Jie Deng, Peng He, Lauren Wickstrom, Alexander L. Perryman, Daniel N. Santiago, Stefano Forli, Arthur J. Olson, Ronald M. Levy
Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challenge. J. Comput. Aided Mol. Des. 28 (4) (2014)
Diogo Santos-Martins, Stefano Forli, Maria João Ramos, Arthur J. Olson
: An Improved AutoDock Force Field for Small-Molecule Docking to Zinc Metalloproteins. J. Chem. Inf. Model. 54 (8) (2014)
Garrett M. Morris, Luke G. Green, Zoran Radic, Palmer Taylor, K. Barry Sharpless, Arthur J. Olson, Flavio Grynszpan
Automated Docking with Protein Flexibility in the Design of Femtomolar "Click Chemistry" Inhibitors of Acetylcholinesterase. J. Chem. Inf. Model. 53 (4) (2013)
Siripit Pitchuanchom, Chantana Boonyarat, Stefano Forli, Arthur J. Olson, Chavi Yenjai
Cyclin-dependent kinases 5 template: Useful for virtual screening. Comput. Biol. Medicine 42 (1) (2012)
Ludovic Autin, Graham Johnson, Johan Hake, Arthur J. Olson, Michel F. Sanner
uPy: A Ubiquitous CG Python API with Biological-Modeling Applications. IEEE Computer Graphics and Applications 32 (5) (2012)
Sandro Cosconati, Luciana Marinelli, Francesco Saverio Di Leva, Valeria La Pietra, Angela De Simone, Francesca Mancini, Vincenza Andrisano, Ettore Novellino, David S. Goodsell, Arthur J. Olson
Protein Flexibility in Virtual Screening: The BACE-1 Case Study. J. Chem. Inf. Model. 52 (10) (2012)
Jui-Chih Wang, Jung-Hsin Lin, Chung-Ming Chen, Alex L. Perryman, Arthur J. Olson
Robust Scoring Functions for Protein-Ligand Interactions with Quantum Chemical Charge Models. J. Chem. Inf. Model. 51 (10) (2011)
Oleg Trott, Arthur J. Olson
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J. Comput. Chem. 31 (2) (2010)
Garrett M. Morris, Ruth Huey, William Lindstrom, Michel F. Sanner, Richard K. Belew, David S. Goodsell, Arthur J. Olson
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. J. Comput. Chem. 30 (16) (2009)
Max W. Chang, Richard K. Belew, Kate S. Carroll, Arthur J. Olson, David S. Goodsell
Empirical entropic contributions in computational docking: Evaluation in APS reductase complexes. J. Comput. Chem. 29 (11) (2008)
Ruth Huey, Garrett M. Morris, Arthur J. Olson, David S. Goodsell
A semiempirical free energy force field with charge-based desolvation. J. Comput. Chem. 28 (6) (2007)
Max W. Chang, William Lindstrom, Arthur J. Olson, Richard K. Belew
Analysis of HIV Wild-Type and Mutant Structures via in Silico Docking against Diverse Ligand Libraries. J. Chem. Inf. Model. 47 (3) (2007)
Alexandre Gillet, Michel F. Sanner, Daniel Stoffler, Arthur J. Olson
Tangible Augmented Interfaces for Structural Molecular Biology. IEEE Computer Graphics and Applications 25 (2) (2005)
Alexandre Gillet, Suzanne Weghorst, William Winn, Daniel Stoffler, Michel F. Sanner, David S. Goodsell, Arthur J. Olson
Computer-linked autofabricated 3D models for teaching structural biology. SIGGRAPH Sketches (2004)
Alexandre Gillet, Michel F. Sanner, Daniel Stoffler, David S. Goodsell, Arthur J. Olson
Augmented Reality with Tangible Auto-Fabricated Models for Molecular Biology Applications. IEEE Visualization (2004)
Ganesh Sankaranarayanan, Suzanne Weghorst, Michel F. Sanner, Alexandre Gillet, Arthur J. Olson
Role of Haptics in Teaching Structural Molecular Biolog. HAPTICS (2003)
Daniel Stoffler, Sophie I. Coon, Ruth Huey, Arthur J. Olson, Michel F. Sanner
Integrating Biomolecular Analysis and Visual Programming: Flexibility and Interactivity in the Design of Bioinformatics Tools. HICSS (2003)
Robin J. Rosenfeld, David S. Goodsell, Rabi A. Musah, Garrett M. Morris, David B. Goodin, Arthur J. Olson
Automated docking of ligands to an artificial active site: augmenting crystallographic analysis with computer modeling. J. Comput. Aided Mol. Des. 17 (8) (2003)
Ikuko Takanashi, Eric B. Lum, Kwan-Liu Ma, Jörg Meyer, Bernd Hamann, Arthur J. Olson
Segmentation and 3D visualization of high-resolution human brain cryosections. Visualization and Data Analysis (2002)
Michel F. Sanner, Bruce S. Duncan, C. J. Carrillo, Arthur J. Olson
Integrating Computation and Visualization for Biomolecular Analysis: An Example Using Python and AVS. Pacific Symposium on Biocomputing (1999)
Garrett M. Morris, David S. Goodsell, Robert S. Halliday, Ruth Huey, William E. Hart, Richard K. Belew, Arthur J. Olson
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. 19 (14) (1998)
Christopher D. Rosin, Richard K. Belew, Garrett M. Morris, Arthur J. Olson, David S. Goodsell
Computational Coevolution of Antiviral Drug Resistance. Artif. Life 4 (1) (1998)
Bruce S. Duncan, Arthur J. Olson
Applications of Evolutionary Programming for the Prediction of Protein-Protein Interactions. Evolutionary Programming (1996)
Garrett M. Morris, David S. Goodsell, Ruth Huey, Arthur J. Olson
Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4. J. Comput. Aided Mol. Des. 10 (4) (1996)
Boris A. Reva, Michel F. Sanner, Arthur J. Olson, Alexei V. Finkelstein
Lattice modeling: Accuracy of energy calculations. J. Comput. Chem. 17 (8) (1996)
Michel F. Sanner, Arthur J. Olson, Jean-Claude Spehner
Fast and Robust Computation of Molecular Surfaces. SCG (1995)
Boris A. Reva, Dmitrii S. Rykunov, Arthur J. Olson, Alexei V. Finkelstein
Constructing Lattice Models of Protein Chains with Side Groups. J. Comput. Biol. 2 (4) (1995)
David S. Goodsell, Arthur J. Olson
Molecular applications of volume rendering and 3-D texture maps. VVS (1989)
Michael L. Connolly, Arthur J. Olson
GRANNY, a companion to GRAMPS for the real-time manipulation of macromolecular models. Comput. Chem. 9 (1) (1985)
Richard A. Alden, Gerard Bricogne, Stephan T. Freer, Sid R. Hall, Wayne A. Hendrickson, Penelope Anne Machin, Robert J. Munn, Arthur J. Olson, George N. Reeke Jr.
Cooperative programming in crich ystallography. Comput. Chem. 7 (3) (1983)
T. J. O'Donnell, Arthur J. Olson
GRAMPS - A graphics language interpreter for real-time, interactive, three-dimensional picture editing and animation. SIGGRAPH (1981)