Barbora Kozlíková

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 58

Top Topics

Immersive Virtual Environments

Molecular Dynamics

Interactive Visual

Visual Analysis

Top Venues

IEEE Trans. Vis. Comput. Graph.

Comput. Graph. Forum

Publications

Adam J. Stepanek, David Kuták, Barbora Kozlíková, Jan Byska
Interactive Diagrams for Software Documentation. CoRR (2024)
Matej Lang, Radoslav Mráz, Marek Trtík, Sergej Stoppel, Jan Byska, Barbora Kozlíková
Antarstick: Extracting Snow Height From Time-Lapse Photography. Comput. Graph. Forum 43 (3) (2024)
Marco Schäfer, Nicolas Brich, Jan Byska, Sérgio M. Marques, David Bednár, Philipp Thiel, Barbora Kozlíková, Michael Krone
InVADo: Interactive Visual Analysis of Molecular Docking Data. IEEE Trans. Vis. Comput. Graph. 30 (4) (2024)
Matej Lang, Adam J. Stepanek, Róbert Zvara, Vojtech Rehák, Barbora Kozlíková
Who Let the Guards Out: Visual Support for Patrolling Games. CoRR (2024)
Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias, Jan Byska, Jan Stourac, David Bednár, Katarína Furmanová, Barbora Kozlíková
Visual Support for the Loop Grafting Workflow on Proteins. CoRR (2024)
David Kuták, Danielle Langlois, Roman Rozic, Jan Byska, Haichao Miao, Simone Kriglstein, Barbora Kozlíková
Design and evaluation of alphabetic and numeric input methods for virtual reality. Comput. Graph. 122 (2024)
Hana Pokojná, Tobias Isenberg, Stefan Bruckner, Barbora Kozlíková, Laura A. Garrison
The Language of Infographics: Toward Understanding Conceptual Metaphor Use in Scientific Storytelling. CoRR (2024)
Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub, M. Kacenga, Matej Gallo, R. Nenutil, Jan Byska, Vít Rusnák
xOpat: eXplainable Open Pathology Analysis Tool. Comput. Graph. Forum 42 (3) (2023)
David Kuták, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byska, Barbora Kozlíková, Haichao Miao
State of the Art of Molecular Visualization in Immersive Virtual Environments. Comput. Graph. Forum 42 (6) (2023)
Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. IEEE Trans. Vis. Comput. Graph. 29 (1) (2023)
Katja Bühler, Barbora Kozlíková, Michael Krone, Cagatay Turkay, Ramasamy Pathmanaban
Visualization of Biomedical Data - Shaping the Future and Building Bridges (Dagstuhl Seminar 23451). Dagstuhl Reports 13 (11) (2023)
Matej Lang, Clemens Strobel, Felix Weckesser, Danielle Langlois, Enkelejda Kasneci, Barbora Kozlíková, Michael Krone
A multimodal smartwatch-based interaction concept for immersive environments. Comput. Graph. 117 (2023)
Joan Planas-Iglesias, Filip Opálený, Pavol Ulbrich, Jan Stourac, Zainab K. Sanusi, Gaspar R. P. Pinto, Andrea Schenkmayerova, Jan Byska, Jirí Damborský, Barbora Kozlíková, David Bednar
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering. Nucleic Acids Res. 50 (W1) (2022)
Matús Talcík, Filip Opálený, Tereza Clarence, Katarína Furmanová, Jan Byska, Barbora Kozlíková, David Kouril
ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework. CoRR (2022)
Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. CoRR (2022)
David Kuták, Matias Nicolás Selzer, Jan Byska, Maria Luján Ganuza, Ivan Barisic, Barbora Kozlíková, Haichao Miao
Vivern-A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures. IEEE Trans. Vis. Comput. Graph. 28 (12) (2022)
Kristína Zákopcanová, Marko Rehácek, Jozef Bátrna, Daniel Plakinger, Sergej Stoppel, Barbora Kozlíková
Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. IEEE Trans. Vis. Comput. Graph. 27 (2) (2021)
Pedro Hermosilla, Marco Schäfer, Matej Lang, Gloria Fackelmann, Pere-Pau Vázquez, Barbora Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski
Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures. ICLR (2021)
Barbora Kozlíková, Michael Krone, Kay Nieselt, Renata G. Raidou, Noeska N. Smit
Foreword: Special section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2020. Comput. Graph. 101 (2021)
David Kouril, Tobias Isenberg, Barbora Kozlíková, Miriah Meyer, M. Eduard Gröller, Ivan Viola
HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models. IEEE Trans. Vis. Comput. Graph. 27 (8) (2021)
Vojtech Bruza, Jan Byska, Jan Mican, Barbora Kozlíková
VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality. Comput. Graph. 98 (2021)
María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková
ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. IEEE Trans. Vis. Comput. Graph. 27 (2) (2021)
Renata Georgia Raidou, Barbora Kozlíková, Johanna Beyer, Timo Ropinski, Issei Fujishiro
Formalizing Biological and Medical Visualization (NII Shonan Meeting 167). NII Shonan Meet. Rep. 2020 (2020)
Katarína Furmanová, Ondrej Vávra, Barbora Kozlíková, Jirí Damborský, Vojtech Vonásek, David Bednar, Jan Byska
DockVis: Visual Analysis of Molecular Docking Trajectories. Comput. Graph. Forum 39 (6) (2020)
Barbora Kozlíková, Bernhard Preim, Katja Bühler, Renata G. Raidou
Foreword: Special Section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2019. Comput. Graph. 92 (2020)
Guido Reina, Hank Childs, Kresimir Matkovic, Katja Bühler, Manuela Waldner, David Pugmire, Barbora Kozlíková, Timo Ropinski, Patric Ljung, Takayuki Itoh, M. Eduard Gröller, Michael Krone
The moving target of visualization software for an increasingly complex world. Comput. Graph. 87 (2020)
María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková
ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. CoRR (2020)
Kristína Zákopcanová, Marko Rehácek, Jozef Bátrna, Daniel Plakinger, Sergej Stoppel, Barbora Kozlíková
Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations. CoRR (2020)
Vojtech Vonásek, Robert Penicka, Barbora Kozlíková
Searching Multiple Approximate Solutions in Configuration Space to Guide Sampling-Based Motion Planning. J. Intell. Robotic Syst. 100 (3) (2020)
Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Trans. Vis. Comput. Graph. 26 (1) (2020)
Pedro Hermosilla, Marco Schäfer, Matej Lang, Gloria Fackelmann, Pere-Pau Vázquez, Barbora Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski
ProteiNN: Intrinsic-Extrinsic Convolution and Pooling for Scalable Deep Protein Analysis. CoRR (2020)
Zoltán Orémus, Kahin Akram Hassan, Jirí Chmelík, Michaela Knazková, Jan Byska, Renata Georgia Raidou, Barbora Kozlíková
PINGU Principles of Interactive Navigation for Geospatial Understanding. PacificVis (2020)
Adam Jurcík, Katarína Furmanová, Jan Byska, Vojtech Vonásek, Ondrej Vávra, Pavol Ulbrich, Helwig Hauser, Barbora Kozlíková
Visual Analysis of Ligand Trajectories in Molecular Dynamics. PacificVis (2019)
David Kouril, Ladislav Cmolík, Barbora Kozlíková, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments. IEEE Trans. Vis. Comput. Graph. 25 (1) (2019)
Katarína Furmanová, Barbora Kozlíková, Vojtech Vonásek, Jan Byska
DockVis: Visual Analysis of Molecular Docking Data. VCBM (2019)
Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. CoRR (2019)
Vojtech Vonásek, Robert Penicka, Barbora Kozlíková
Computing multiple guiding paths for sampling-based motion planning. ICAR (2019)
Vojtech Vonásek, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková
Sampling-Based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations. J. Intell. Robotic Syst. 93 (3-4) (2019)
Pavol Ulbrich, Michal Hornák, Barbora Kozlíková
LOOPS: Visual Analysis Tool for Non-Periodic Protein Structures. EuroVis (Posters) (2019)
Jan Byska, Thomas Trautner, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková, Manuela Waldner
Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization. Comput. Graph. Forum 38 (3) (2019)
David Duran, Pedro Hermosilla, Timo Ropinski, Barbora Kozlíková, Àlvar Vinacua, Pere-Pau Vázquez
Visualization of Large Molecular Trajectories. IEEE Trans. Vis. Comput. Graph. 25 (1) (2019)
Tobias Klein, Ludovic Autin, Barbora Kozlíková, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola
Instant Construction and Visualization of Crowded Biological Environments. IEEE Trans. Vis. Comput. Graph. 24 (1) (2018)
Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. Bioinform. 34 (20) (2018)
Katarína Furmanová, Jan Byska, M. Eduard Gröller, Ivan Viola, Jan J. Palecek, Barbora Kozlíková
COZOID: contact zone identifier for visual analysis of protein-protein interactions. BMC Bioinform. 19 (1) (2018)
Lucia Kocincová, Miroslava Jaresová, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková
Comparative visualization of protein secondary structures. BMC Bioinform. 18 (S-2) (2017)
Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art Revisited. Comput. Graph. Forum 36 (8) (2017)
Viktor Vad, Jan Byska, Adam Jurcík, Ivan Viola, M. Eduard Gröller, Helwig Hauser, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková
Watergate: Visual Exploration of Water Trajectories in Protein Dynamics. VCBM (2017)
Jan Malzahn, Barbora Kozlíková, Timo Ropinski
Protein Tunnel Reprojection for Physico-Chemical Property Analysis. VCBM (2017)
Katarína Furmanová, Miroslava Jaresová, Jan Byska, Adam Jurcík, Július Parulek, Helwig Hauser, Barbora Kozlíková
Interactive exploration of ligand transportation through protein tunnels. BMC Bioinform. 18 (S-2) (2017)
Vojtech Vonásek, Barbora Kozlíková
Tunnel detection in protein structures using sampling-based motion planning. RoMoCo (2017)
Katarína Furmanová, Petra Urbanová, Barbora Kozlíková
AnthroVis: visual analysis of 3D mesh ensembles for forensic anthropology. SCCG (2017)
Igor Chalas, Petra Urbanova, Vojtech Jurík, Zuzana Ferkova, Marie Jandová, Jirí Sochor, Barbora Kozlíková
Generating various composite human faces from real 3D facial images. Vis. Comput. 33 (4) (2017)
Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Július Parulek, Hans-Christian Hege, Ivan Viola
Visual Analysis of Biomolecular Cavities: State of the Art. Comput. Graph. Forum 35 (3) (2016)
Jan Byska, Mathieu Le Muzic, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková
AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics. IEEE Trans. Vis. Comput. Graph. 22 (1) (2016)
Vojtech Vonásek, Barbora Kozlíková
Application of sampling-based path planning for tunnel detection in dynamic protein structures. MMAR (2016)
Ivan Kolesár, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková
Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics. VCBM/MedViz (2016)
Antonín Pavelka, Eva Sebestova, Barbora Kozlíková, Jan Brezovsky, Jirí Sochor, Jirí Damborský
CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (3) (2016)
Adam Jurcík, Július Parulek, Jirí Sochor, Barbora Kozlíková
Accelerated visualization of transparent molecular surfaces in molecular dynamics. PacificVis (2016)
Jan Byska, Ivana Kolingerová, Barbora Kozlíková, Jirí Sochor
Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks. SCCG (2015)
Igor Chalas, Zuzana Ferkova, Katarína Furmanová, Jiri Sochor, Barbora Kozlíková
Generation of Variable Human Faces from 3D Scan Dataset. VS-GAMES (2015)
Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art. EuroVis (STARs) (2015)
Jan Byska, Adam Jurcík, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková
MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. Comput. Graph. Forum 34 (3) (2015)
Adam Jurcík, Jan Byska, Jirí Sochor, Barbora Kozlíková
Visibility-based approach to surface detection of tunnels in proteins. SCCG (2015)
Ondrej Strnad, Barbora Kozlíková, Jiri Sochor
Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures. PACBB (2014)
Barbora Kozlíková, Eva Sebestova, Vilém Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonín Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Góra, Jirí Damborský, Jiri Sochor
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinform. 30 (18) (2014)
Barbora Kozlíková, Adam Jurcík, Jan Byska, Ondrej Strnad, Jiri Sochor
Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations. VCBM (2014)
Eva Chovancová, Antonín Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Barbora Kozlíková, Artur Góra, Vilém Sustr, Martin Klvana, Petr Medek, Lada Biedermannová, Jiri Sochor, Jirí Damborský
CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures. PLoS Comput. Biol. 8 (10) (2012)
Barbora Kozlíková, Jirí Sochor
CAVER Viewer - the explorer of behaviour of tunnels in proteins. Eurographics (Posters) (2010)
Barbora Kozlíková, Filip Andres, Jiri Sochor
Visualization of tunnels in protein molecules. Afrigraph (2007)