Petr Holub

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 18

Top Topics

Multicast Routing

Top Venues

Future Gener. Comput. Syst.

Publications

Maria A Rujano, Jan-Willem Boiten, Christian Ohmann, Steve Canham, Sergio Contrino, Romain David, Jonathan Ewbank, Claudia Filippone, Claire Connellan, Ilse Custers, Rick van Nuland, Michaela Theresia Mayrhofer, Petr Holub, Eva García Álvarez, Emmanuel Bacry, Nigel Hughes, Mallory A Freeberg, Birgit Schaffhauser, Harald Wagener, Alex Sánchez-Pla, Guido Bertolini, Maria Panagiotopoulou
Sharing sensitive data in life sciences: an overview of centralized and federated approaches. Briefings Bioinform. 25 (4) (2024)
Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub, M. Kacenga, Matej Gallo, R. Nenutil, Jan Byska, Vít Rusnák
xOpat: eXplainable Open Pathology Analysis Tool. Comput. Graph. Forum 42 (3) (2023)
Romain David, Audrey S. Richard, Claire Connellan, Katharina B. Lauer, Maria Luisa Chiusano, Carole A. Goble, Martin Houde, Isabel Kemmer, Antje Keppler, Philippe Lieutaud, Christian Ohmann, Maria Panagiotopoulou, Sara Raza Khan, Arina Rybina, Stian Soiland-Reyes, Charlotte Wit, Rudolf Wittner, Rafael Andrade Buono, Sarah Arnaud Marsh, Pauline Audergon, Dylan Bonfils, Jose-Maria Carazo, Remi Charrel, Frederik Coppens, Wolfgang Fecke, Claudia Filippone, Eva G. Alvarez, Sheraz Gul, Henning Hermjakob, Katja Herzog, Petr Holub, Lukasz Kozera, Allyson L. Lister, José López-Coronado, Bénédicte Madon, Kurt Majcen, William Martin, Wolfgang Müller, Elli Papadopoulou, Christine M. A. Prat, Paolo Romano, Susanna-Assunta Sansone, Gary Saunders, Niklas Blomberg, Jonathan Ewbank
Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness. Data Sci. J. 22 (2023)
Jan-Willem Boiten, Christian Ohmann, Ayodeji Adeniran, Steve Canham, Mónica Cano Abadia, Gauthier Chassang, Maria Luisa Chiusano, Romain David, Maddalena Fratelli, Philip Gribbon, Petr Holub, Rebecca Ludwig, Michaela Theresia Mayrhofer, Mihaela Matei, Arshiya Merchant, Maria Panagiotopoulou, Luca Pireddu, Alex Sánchez-Pla, Irene Schlünder, George Tsamis, Harald Wagener
EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description. CoRR (2022)
Francesca Frexia, Cecilia Mascia, Rudolf Wittner, Markus Plass, Heimo Müller, Jörg Geiger, Petr Holub
The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes. MIE (2022)
Elliot Fairweather, Rudolf Wittner, Martin Chapman, Petr Holub, Vasa Curcin
Non-repudiable Provenance for Clinical Decision Support Systems. IPAW (2021)
Athos Antoniades, Maria Papaioannou, Apostolos Malatras, Gregory Papagregoriou, Heimo Müller, Petr Holub, Constantinos Deltas, Christos N. Schizas
Integration of Biobanks in National eHealth Ecosystems Facilitating Long-Term Longitudinal Clinical-Omics Studies and Citizens' Engagement in Research Through eHealthBioR. Frontiers Digit. Health 3 (2021)
Rudolf Wittner, Petr Holub, Heimo Müller, Joerg Geiger, Carole A. Goble, Stian Soiland-Reyes, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Elliot Fairweather, Jason R. Swedlow, Josh Moore, Caterina Strambio-De-Castillia, David Grunwald, Hiroki Nakae
ISO 23494: Biotechnology - Provenance Information Model for Biological Specimen And Data. IPAW (2021)
Peter Wittenburg, Franciska de Jong, Dieter Van Uytvanck, Massimo Cocco, Keith G. Jeffery, Michael Lautenschlager, Hannes Thiemann, Margareta Hellström, Ari Asmi, Petr Holub
State of FAIRness in ESFRI Projects. Data Intell. 2 (1-2) (2020)
Elliot Fairweather, Rudolf Wittner, Martin Chapman, Petr Holub, Vasa Curcin
Non-repudiable provenance for clinical decision support systems. CoRR (2020)
Sebastian Mate, Marvin O. Kampf, Wolfgang Rödle, Stefan Kraus, Rumyana Proynova, Kaisa Silander, Lars Ebert, Martin Lablans, Christina Schüttler, Christian Knell, Niina Eklund, Michael Hummel, Petr Holub, Hans-Ulrich Prokosch
Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC. Appl. Clin. Inform. 10 (04) (2019)
Isabelle Perseil, Petr Holub
Towards a reconstructive methodology for building a provenance metamodel that fits the complex bioinformatics pipelines. RO (2019)
Pavel Troubil, Hana Rudová, Petr Holub
Dynamic reconfiguration in multigroup multicast routing under uncertainty. J. Heuristics 24 (3) (2018)
Chao Pang, Fleur D. L. Kelpin, David van Enckevort, Niina Eklund, Kaisa Silander, Dennis Hendriksen, Mark de Haan, Jonathan Jetten, Tommy de Boer, Bart Charbon, Petr Holub, Hans L. Hillege, Morris A. Swertz
BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. Bioinform. 33 (22) (2017)
Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluis Gelpí, Simon Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch
Four simple recommendations to encourage best practices in research software. F1000Research 6 (2017)
Rumyana Proynova, Diogo Alexandre, Martin Lablans, David van Enckevort, Sebastian Mate, Niina Eklund, Kaisa Silander, Michael Hummel, Petr Holub, Frank Ückert
A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples. GMDS (2017)
Vít Rusnák, Lukás Rucka, Petr Holub
Toward natural multi-user interaction in advanced collaborative display environments. Future Gener. Comput. Syst. 54 (2016)
Milan Kabát, Vojtech David, Petr Holub, Martin Pulec
High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss. Future Gener. Comput. Syst. 54 (2016)
Jiri Marek, Hana Rudová, Petr Holub
Local Search Heuristics for Media Streams Planning with Transcoding. NCA (2014)
Pavel Troubil, Hana Rudová, Petr Holub
Media Streams Planning with Uncertain Link Capacities. NCA (2014)
Pavel Troubil, Hana Rudová, Petr Holub
Media Streams Planning with Transcoding. NCA (2013)
Petr Holub, Martin Srom, Martin Pulec, Jiri Matela, Martin Jirman
GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video. Future Gener. Comput. Syst. 29 (8) (2013)
Jiri Marek, Petr Holub, Hana Rudová
Local Search Heuristics for Media Streams Planning Problem. AINA (2013)
Petr Holub, Jiri Matela, Martin Pulec, Martin Srom
UltraGrid: low-latency high-quality video transmissions on commodity hardware. ACM Multimedia (2012)
Vít Rusnák, Lukás Rucka, Petr Holub
Towards User-Aware Multi-touch Interaction Layer for Group Collaborative Systems. MEMICS (2012)
Petr Slovák, Peter Novák, Pavel Troubil, Vít Rusnák, Petr Holub, Erik C. Hofer
Exploring Collaboration in Group-to-Group Videoconferencing. COOP (2012)
Petr Slovák, Peter Novák, Pavel Troubil, Petr Holub, Erik C. Hofer
Exploring trust in group-to-group video-conferencing. CHI Extended Abstracts (2011)
Petr Holub, Hana Rudová, Milos Liska
Data transfer planning with tree placement for collaborative environments. Constraints An Int. J. 16 (3) (2011)
Jiri Matela, Vít Rusnák, Petr Holub
Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures. DCC (2011)
Jiri Matela, Martin Srom, Petr Holub
Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000. MEMICS (2011)
Petr Slovák, Pavel Troubil, Petr Holub
GColl: enhancing trust in flexible group-to-group videoconferencing. CHI Extended Abstracts (2010)
Jiri Matela, Vít Rusnák, Petr Holub
GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. MEMICS (2010)
Kenny Welshons, Patrick Dorn, Andrei Hutanu, Petr Holub, John Vollbrecht, Gabrielle Allen
Design and implementation of a production dynamically configurable testbed. TG (2010)
Petr Slovák, Pavel Troubil, Petr Holub
GColl: A Flexible Videoconferencing Environment for Group-to-Group Interaction. INTERACT (2) (2009)
Milos Liska, Petr Holub
CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. ICN (2009)
Michal Procházka, Petr Holub, Eva Hladká
jSon: Network of Active Elements with Peer-to-Peer Control Plane. ICN (2009)
David Antos, Ludek Matyska, Petr Holub, Jirí Sitera
VirtCloud: Virtualising Network for Grid Environments. AINA (2009)
Petr Slovák, Pavel Troubil, Petr Holub
GColl group-to-group videoconferencing system: design and first experiences. CollaborateCom (2009)
Milos Liska, Petr Holub
CoUniverse: Framework for Building Self-organizing Collaborative Environments Using Extreme-Bandwidth Media Applications. Euro-Par Workshops (2008)
Andrei Hutanu, Ravi Paruchuri, Daniel Eiland, Milos Liska, Petr Holub, Steven R. Thorpe, Yufeng Xin
Uncompressed HD video for collaborative teaching - an experiment. CollaborateCom (2007)
Petr Holub, Eva Hladká, Michal Procházka, Milos Liska
Secure and Pervasive Collaborative Platform for Medical Applications. HealthGrid (2007)
Eva Hladká, Daniel Kouril, Michal Procházka, Ludek Matyska, Petr Holub
Transparent security for collaborative environments. CollaborateCom (2007)
Petr Holub, Ludek Matyska, Milos Liska, Lukás Hejtmánek, Jirí Denemark, Tomás Rebok, Andrei Hutanu, Ravi Paruchuri, Jan Radil, Eva Hladká
High-definition multimedia for multiparty low-latency interactive communication. Future Gener. Comput. Syst. 22 (8) (2006)
Michal Procházka, Petr Holub, Eva Hladká
Active Element Network with P2P Control Plane. IWSOS/EuroNGI (2006)
Andrei Hutanu, Gabrielle Allen, Stephen David Beck, Petr Holub, Hartmut Kaiser, Archit Kulshrestha, Milos Liska, Jon MacLaren, Ludek Matyska, Ravi Paruchuri, Steffen Prohaska, Edward Seidel, Brygg Ullmer, Shalini Venkataraman
Distributed and collaborative visualization of large data sets using high-speed networks. Future Gener. Comput. Syst. 22 (8) (2006)
Petr Holub, Eva Hladká, Ludek Matyska
Scalability and Robustness of Virtual Multicast for Synchronous Multimedia Distribution. ICN (2) (2005)
Eva Hladká, Petr Holub, Jirí Denemark
User-Empowered Programmable Network Support for Collaborative Environment. ECUMN (2004)
Petr Holub, Martin Kuba, Ludek Matyska, Miroslav Ruda
Grid Infrastructure Monitoring as Reliable Information Service. European Across Grids Conference (2004)
Petr Holub, Lukás Hejtmánek
Distributed Encoding Environment based on Grids and IBP Infrastructure. TERENA Networking Conference (2004)