Jan Byska

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 33

Top Topics

Molecular Dynamics

Protein Structure

Visual Analysis

Interactive Exploration

Top Venues

IEEE Trans. Vis. Comput. Graph.

Comput. Graph. Forum

Publications

Adam J. Stepanek, David Kuták, Barbora Kozlíková, Jan Byska
Interactive Diagrams for Software Documentation. CoRR (2024)
Matej Lang, Radoslav Mráz, Marek Trtík, Sergej Stoppel, Jan Byska, Barbora Kozlíková
Antarstick: Extracting Snow Height From Time-Lapse Photography. Comput. Graph. Forum 43 (3) (2024)
Marco Schäfer, Nicolas Brich, Jan Byska, Sérgio M. Marques, David Bednár, Philipp Thiel, Barbora Kozlíková, Michael Krone
InVADo: Interactive Visual Analysis of Molecular Docking Data. IEEE Trans. Vis. Comput. Graph. 30 (4) (2024)
Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias, Jan Byska, Jan Stourac, David Bednár, Katarína Furmanová, Barbora Kozlíková
Visual Support for the Loop Grafting Workflow on Proteins. CoRR (2024)
David Kuták, Danielle Langlois, Roman Rozic, Jan Byska, Haichao Miao, Simone Kriglstein, Barbora Kozlíková
Design and evaluation of alphabetic and numeric input methods for virtual reality. Comput. Graph. 122 (2024)
Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub, M. Kacenga, Matej Gallo, R. Nenutil, Jan Byska, Vít Rusnák
xOpat: eXplainable Open Pathology Analysis Tool. Comput. Graph. Forum 42 (3) (2023)
Jan Byska, Michael Krone, Björn Sommer
Foreword: Special section on Molecular Graphics and Visual Analysis of Molecular Data (MolVA 2023). Comput. Graph. 112 (2023)
David Kuták, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byska, Barbora Kozlíková, Haichao Miao
State of the Art of Molecular Visualization in Immersive Virtual Environments. Comput. Graph. Forum 42 (6) (2023)
Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. IEEE Trans. Vis. Comput. Graph. 29 (1) (2023)
Joan Planas-Iglesias, Filip Opálený, Pavol Ulbrich, Jan Stourac, Zainab K. Sanusi, Gaspar R. P. Pinto, Andrea Schenkmayerova, Jan Byska, Jirí Damborský, Barbora Kozlíková, David Bednar
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering. Nucleic Acids Res. 50 (W1) (2022)
Matús Talcík, Filip Opálený, Tereza Clarence, Katarína Furmanová, Jan Byska, Barbora Kozlíková, David Kouril
ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework. CoRR (2022)
Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration. CoRR (2022)
David Kuták, Matias Nicolás Selzer, Jan Byska, Maria Luján Ganuza, Ivan Barisic, Barbora Kozlíková, Haichao Miao
Vivern-A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures. IEEE Trans. Vis. Comput. Graph. 28 (12) (2022)
Vojtech Bruza, Jan Byska, Jan Mican, Barbora Kozlíková
VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality. Comput. Graph. 98 (2021)
Jan Byska, Michael Krone, Bjorn Sommer
Foreword to the special section on molecular graphics and visual analysis of molecular data (MolVA 2021). Comput. Graph. 99 (2021)
María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková
ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. IEEE Trans. Vis. Comput. Graph. 27 (2) (2021)
Katarína Furmanová, Ondrej Vávra, Barbora Kozlíková, Jirí Damborský, Vojtech Vonásek, David Bednar, Jan Byska
DockVis: Visual Analysis of Molecular Docking Trajectories. Comput. Graph. Forum 39 (6) (2020)
Juraj Pálenik, Jan Byska, Stefan Bruckner, Helwig Hauser
Scale-Space Splatting: Reforming Spacetime for Cross-Scale Exploration of Integral Measures in Molecular Dynamics. IEEE Trans. Vis. Comput. Graph. 26 (1) (2020)
María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková
ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening. CoRR (2020)
Pierre Bedoucha, Nathalie Reuter, Helwig Hauser, Jan Byska
Visual exploration of large normal mode spaces to study protein flexibility. Comput. Graph. 90 (2020)
Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. IEEE Trans. Vis. Comput. Graph. 26 (1) (2020)
Zoltán Orémus, Kahin Akram Hassan, Jirí Chmelík, Michaela Knazková, Jan Byska, Renata Georgia Raidou, Barbora Kozlíková
PINGU Principles of Interactive Navigation for Geospatial Understanding. PacificVis (2020)
Adam Jurcík, Katarína Furmanová, Jan Byska, Vojtech Vonásek, Ondrej Vávra, Pavol Ulbrich, Helwig Hauser, Barbora Kozlíková
Visual Analysis of Ligand Trajectories in Molecular Dynamics. PacificVis (2019)
Katarína Furmanová, Barbora Kozlíková, Vojtech Vonásek, Jan Byska
DockVis: Visual Analysis of Molecular Docking Data. VCBM (2019)
Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. CoRR (2019)
Jan Byska, Thomas Trautner, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková, Manuela Waldner
Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization. Comput. Graph. Forum 38 (3) (2019)
Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. Bioinform. 34 (20) (2018)
Katarína Furmanová, Jan Byska, M. Eduard Gröller, Ivan Viola, Jan J. Palecek, Barbora Kozlíková
COZOID: contact zone identifier for visual analysis of protein-protein interactions. BMC Bioinform. 19 (1) (2018)
Lucia Kocincová, Miroslava Jaresová, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková
Comparative visualization of protein secondary structures. BMC Bioinform. 18 (S-2) (2017)
Viktor Vad, Jan Byska, Adam Jurcík, Ivan Viola, M. Eduard Gröller, Helwig Hauser, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková
Watergate: Visual Exploration of Water Trajectories in Protein Dynamics. VCBM (2017)
Katarína Furmanová, Miroslava Jaresová, Jan Byska, Adam Jurcík, Július Parulek, Helwig Hauser, Barbora Kozlíková
Interactive exploration of ligand transportation through protein tunnels. BMC Bioinform. 18 (S-2) (2017)
Jan Byska, Mathieu Le Muzic, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková
AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics. IEEE Trans. Vis. Comput. Graph. 22 (1) (2016)
Ivan Kolesár, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková
Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics. VCBM/MedViz (2016)
Jan Byska, Ivana Kolingerová, Barbora Kozlíková, Jirí Sochor
Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks. SCCG (2015)
Jan Byska, Adam Jurcík, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková
MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. Comput. Graph. Forum 34 (3) (2015)
Adam Jurcík, Jan Byska, Jirí Sochor, Barbora Kozlíková
Visibility-based approach to surface detection of tunnels in proteins. SCCG (2015)
Barbora Kozlíková, Adam Jurcík, Jan Byska, Ondrej Strnad, Jiri Sochor
Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations. VCBM (2014)
Jan Byska, Adam Jurcík, Jiri Sochor
Geometry-based Algorithm for Detection of Asymmetric Tunnels in Protein Molecules. TPCG (2013)