Ondrej Strnad

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 15

Top Topics

Protein Structure

Visualization Tools

Computer Viruses

Top Venues

IEEE Trans. Vis. Comput. Graph.

Publications

Julio Rey Ramirez, Peter Rautek, Ciril Bohak, Ondrej Strnad, Zheyuan Zhang, Sai Li, Ivan Viola, Wolfgang Heidrich
GPU Accelerated 3D Tomographic Reconstruction and Visualization From Noisy Electron Microscopy Tilt-Series. IEEE Trans. Vis. Comput. Graph. 30 (7) (2024)
Ziga Lesar, Ruwayda Alharbi, Ciril Bohak, Ondrej Strnad, Christoph Heinzl, Matija Marolt, Ivan Viola
Volume conductor: interactive visibility management for crowded volumes. Vis. Comput. 40 (2) (2024)
Ruwayda Alharbi, Ondrej Strnad, Markus Hadwiger, Ivan Viola
Nanouniverse: Virtual Instancing of Structural Detail and Adaptive Shell Mapping. CoRR (2024)
Ngan V. T. Nguyen, Feng Liang, Dominik Engel, Ciril Bohak, Ondrej Strnad, Timo Ropinski, Ivan Viola
Towards Differentiable Electron Microscopy Simulation: Methods and Applications. PacificVis (2024)
Donggang Jia, Alexandra Irger, Ondrej Strnad, Johanna Björklund, Anders Ynnerman, Ivan Viola
VOICE: Visual Oracle for Interaction, Conversation, and Explanation. CoRR (2023)
Ngan Nguyen, Ciril Bohak, Dominik Engel, Peter Mindek, Ondrej Strnad, Peter Wonka, Sai Li, Timo Ropinski, Ivan Viola
Finding Nano-Ötzi: Cryo-Electron Tomography Visualization Guided by Learned Segmentation. IEEE Trans. Vis. Comput. Graph. 29 (10) (2023)
Ruwayda Alharbi, Ondrej Strnad, Laura Rosalia Luidolt, Manuela Waldner, David Kouril, Ciril Bohak, Tobias Klein, Eduard Gröller, Ivan Viola
Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments. IEEE Trans. Vis. Comput. Graph. 29 (3) (2023)
David Kouril, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Gröller, Ivan Viola
Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization. IEEE Trans. Vis. Comput. Graph. 29 (3) (2023)
Deng Luo, Alexandre Kouyoumdjian, Ondrej Strnad, Haichao Miao, Ivan Barisic, Ivan Viola
SynopSet: Multiscale Visual Abstraction Set for Explanatory Analysis of DNA Nanotechnology Simulations. CoRR (2022)
Ziga Lesar, Ruwayda Alharbi, Ciril Bohak, Ondrej Strnad, Christoph Heinzl, Matija Marolt, Ivan Viola
Volume Conductor: Interactive Visibility Management for Crowded Volumes. CoRR (2022)
Ruwayda Alharbi, Ondrej Strnad, Tobias Klein, Ivan Viola
Nanomatrix: Scalable Construction of Crowded Biological Environments. CoRR (2022)
Peter Mindek, Ivan Viola, Ondrej Strnad, Ciril Bohak, Sai Li, Tobias Klein
@What does a virus actually look like? SIGGRAPH Computer Animation Festival (2021)
Ngan V. T. Nguyen, Ondrej Strnad, Tobias Klein, Deng Luo, Ruwayda Alharbi, Peter Wonka, Martina Maritan, Peter Mindek, Ludovic Autin, David S. Goodsell, Ivan Viola
Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models. IEEE Trans. Vis. Comput. Graph. 27 (2) (2021)
David Kouril, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Gröller, Ivan Viola
Molecumentary: Scalable Narrated Documentaries Using Molecular Visualization. CoRR (2020)
Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. Bioinform. 34 (20) (2018)
Ondrej Strnad, Barbora Kozlíková, Jiri Sochor
Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures. PACBB (2014)
Barbora Kozlíková, Eva Sebestova, Vilém Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonín Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Góra, Jirí Damborský, Jiri Sochor
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures. Bioinform. 30 (18) (2014)
Barbora Kozlíková, Adam Jurcík, Jan Byska, Ondrej Strnad, Jiri Sochor
Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations. VCBM (2014)
Eva Chovancová, Antonín Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Barbora Kozlíková, Artur Góra, Vilém Sustr, Martin Klvana, Petr Medek, Lada Biedermannová, Jiri Sochor, Jirí Damborský
CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures. PLoS Comput. Biol. 8 (10) (2012)