Marc Baaden

ORCID

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 19

Top Venues

J. Integr. Bioinform.

Comput. Graph. Forum

Frontiers Bioinform.

J. Chem. Inf. Model.

Louis Pasteur University, Strasbourg, Alsace, France (PHD)

Education History

Louis Pasteur University, Strasbourg, Alsace, France

PHD

Publications

Raphaelle Versini, Sujith Sritharan, Burcu Aykac Fas, Thibault Tubiana, Sana Zineb Aimeur, Julien Henri, Marie Erard, Oliver Nüsse, Jessica Andreani, Marc Baaden, Patrick Fuchs, Tatiana Galochkina, Alexios Chatzigoulas, Zoe Cournia, Hubert Santuz, Sophie Sacquin-Mora, Antoine Taly
A Perspective on the Prospective Use of AI in Protein Structure Prediction. J. Chem. Inf. Model. 64 (1) (2024)
Hayet Belghit, Mariano Spivak, Manuel Dauchez, Marc Baaden, Jessica Prévoteau-Jonquet
From complex data to clear insights: visualizing molecular dynamics trajectories. Frontiers Bioinform. 4 (2024)
Robin A. Corey, Marc Baaden, Matthieu Chavent
A brief history of visualizing membrane systems in molecular dynamics simulations. Frontiers Bioinform. 3 (2023)
David Kuták, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byska, Barbora Kozlíková, Haichao Miao
State of the Art of Molecular Visualization in Immersive Virtual Environments. Comput. Graph. Forum 42 (6) (2023)
Marc Baaden
Deep inside molecules - digital twins at the nanoscale. Virtual Real. Intell. Hardw. 4 (4) (2022)
André Lanrezac, Benoist Laurent, Hubert Santuz, Nicolas Férey, Marc Baaden
Fast and Interactive Positioning of Proteins within Membranes. Algorithms 15 (11) (2022)
Björn Sommer, Daisuke Inoue, Marc Baaden
Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design. J. Integr. Bioinform. 19 (2) (2022)
Davide Spalvieri, Anne-Marine Mauviel, Matthieu Lambert, Nicolas Férey, Sophie Sacquin-Mora, Matthieu Chavent, Marc Baaden
Design - a new way to look at old molecules. J. Integr. Bioinform. 19 (2) (2022)
Núria López, Luigi Del Debbio, Marc Baaden, Matej Praprotnik, Laura Grigori, Catarina Simões, Serge Bogaerts, Florian Berberich, Thomas Lippert, Janne Ignatius, Philippe Lavocat, Oriol Pineda, Maria Grazia Giuffreda, Sergi Girona, Dieter Kranzlmüller, Michael M. Resch, Gabriella Scipione, Thomas C. Schulthess
Lessons learned from urgent computing in Europe: Tackling the COVID-19 pandemic. Proc. Natl. Acad. Sci. USA 118 (46) (2021)
Xavier Martinez, Michael Krone, Marc Baaden
QuickSES: A Library for Fast Computation of Solvent Excluded Surfaces. MolVa@EuroVis (2019)
Marc Baaden, Olivier Delalande, Nicolas Férey, Samuela Pasquali, Jérôme Waldispühl, Antoine Taly
Ten simple rules to create a serious game, illustrated with examples from structural biology. PLoS Comput. Biol. 14 (3) (2018)
Seán I. O'Donoghue, Masakazu Sekijima, Marc Baaden
Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19). NII Shonan Meet. Rep. 2018 (2018)
Alexandre Maes, Xavier Martinez, Karen Druart, Benoist Laurent, Sean Guégan, Christophe H. Marchand, Stéphane D. Lemaire, Marc Baaden
MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis. J. Integr. Bioinform. 15 (2) (2018)
Mikael Trellet, Nicolas Férey, Jakub Flotynski, Marc Baaden, Patrick Bourdot
Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data. J. Integr. Bioinform. 15 (2) (2018)
Björn Sommer, Marc Baaden, Michael Krone, Andrew J. Woods
From Virtual Reality to Immersive Analytics in Bioinformatics. J. Integr. Bioinform. 15 (2) (2018)
Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art Revisited. Comput. Graph. Forum 36 (8) (2017)
Marc Baaden, Olivier Delalande, Nicolas Férey, Samuela Pasquali, Jérôme Waldispühl, Antoine Taly
10 simple rules to create a serious game, illustrated with examples from structural biology. CoRR (2017)
Naif Alharbi, Mohammad Alharbi, Xavier Martinez, Michael Krone, Alexander S. Rose, Marc Baaden, Robert S. Laramee, Matthieu Chavent
Molecular Visualization of Computational Biology Data: A Survey of Surveys. EuroVis (Short Papers) (2017)
Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Július Parulek, Hans-Christian Hege, Ivan Viola
Visual Analysis of Biomolecular Cavities: State of the Art. Comput. Graph. Forum 35 (3) (2016)
Benoist Laurent, Matthieu Chavent, Tristan Cragnolini, Anna Caroline E. Dahl, Samuela Pasquali, Philippe Derreumaux, Mark S. P. Sansom, Marc Baaden
Epock: rapid analysis of protein pocket dynamics. Bioinform. 31 (9) (2015)
Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art. EuroVis (STARs) (2015)
Mian Wang, Marc Baaden, Jianyi Wang, Zhiqun Liang
A Cooperative Mechanism of Clotrimazoles in P450 Revealed by the Dissociation Picture of Clotrimazole from P450. J. Chem. Inf. Model. 54 (4) (2014)
Mikael Trellet, Nicolas Férey, Marc Baaden, Patrick Bourdot
Content-guided Navigation in Multimeric Molecular Complexes. BIOIMAGING (2014)
Sebastien Doutreligne, Tristan Cragnolini, Samuela Pasquali, Philippe Derreumaux, Marc Baaden
UnityMol: Interactive scientific visualization for integrative biology. LDAV (2014)
Daniel L. Parton, Alex Tek, Marc Baaden, Mark S. P. Sansom
Formation of Raft-Like Assemblies within Clusters of Influenza Hemagglutinin Observed by MD Simulations. PLoS Comput. Biol. 9 (4) (2013)
Matthieu Dreher, Marc Piuzzi, Ahmed Turki, Matthieu Chavent, Marc Baaden, Nicolas Férey, Sébastien Limet, Bruno Raffin, Sophie Robert
Interactive Molecular Dynamics: Scaling up to Large Systems. ICCS (2013)
Matthieu Chavent, Bruno Lévy, Michael Krone, Katrin Bidmon, Jean-Philippe Nomine, Thomas Ertl, Marc Baaden
GPU-powered tools boost molecular visualization. Briefings Bioinform. 12 (6) (2011)
Matthieu Chavent, Antoine Vanel, Alex Tek, Bruno Lévy, Sophie Robert, Bruno Raffin, Marc Baaden
GPU-accelerated atom and dynamic bond visualization using hyperballs: A unified algorithm for balls, sticks, and hyperboloids. J. Comput. Chem. 32 (13) (2011)
Olivier Delalande, Nicolas Férey, Benoist Laurent, Marc Gueroult, Brigitte Hartmann, Marc Baaden
Multi-Resolution Approach for Interactively Locating Functionally Linked Ion Binding Sites by Steering Small Molecules into Electrostatic Potential Maps Using a Haptic Device. Pacific Symposium on Biocomputing (2010)
Marc Gueroult, Daniel Picot, Joséphine Abi-Ghanem, Brigitte Hartmann, Marc Baaden
How Cations Can Assist DNase I in DNA Binding and Hydrolysis. PLoS Comput. Biol. 6 (11) (2010)
Olivier Delalande, Nicolas Férey, Gilles Grasseau, Marc Baaden
Complex molecular assemblies at hand via interactive simulations. J. Comput. Chem. 30 (15) (2009)
Nicolas Férey, Olivier Delalande, Gilles Grasseau, Marc Baaden
From Interactive to Immersive Molecular Dynamics. VRIPHYS (2008)
Nicolas Férey, Olivier Delalande, Gilles Grasseau, Marc Baaden
A VR framework for interacting with molecular simulations. VRST (2008)
Elmar Krieger, Laurent Leger, Marie-Pierre Durrieu, Nada Taib, Peter Bond, Michel Laguerre, Richard Lavery, Mark S. P. Sansom, Marc Baaden
Atomistic Modeling of the Membrane-Embedded Synaptic Fusion Complex: a Grand Challenge Project on the DEISA HPC Infrastructure. PARCO (2007)

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Publication Activity (10 Years)

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Marc Baaden