Anjun Ma

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 17

Top Topics

Protein Interaction

Biomedical Data

Biclustering Algorithms

Top Venues

Briefings Bioinform.

Comput. Biol. Medicine

Publications

Yang Li, Anjun Ma, Yizhong Wang, Qi Guo, Cankun Wang, Hongjun Fu, Bingqiang Liu, Qin Ma
Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data. Briefings Bioinform. 25 (5) (2024)
Yang Li, Yizhong Wang, Cankun Wang, Anjun Ma, Qin Ma, Bingqiang Liu
A weighted two-stage sequence alignment framework to identify motifs from ChIP-exo data. Patterns 5 (3) (2024)
Zhaoqian Liu, Qi Wang, Anjun Ma, Shaohong Feng, Dongjun Chung, Jing Zhao, Qin Ma, Bingqiang Liu
Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data. Comput. Biol. Medicine 165 (2023)
Shuangquan Zhang, Lili Yang, Xiaotian Wu, Nan Sheng, Yuan Fu, Anjun Ma, Yan Wang
MMGraph: a multiple motif predictor based on graph neural network and coexisting probability for ATAC-seq data. Bioinform. 38 (19) (2022)
Shuangquan Zhang, Anjun Ma, Jing Zhao, Dong Xu, Qin Ma, Yan Wang
Assessing deep learning methods in cis-regulatory motif finding based on genomic sequencing data. Briefings Bioinform. 23 (1) (2022)
Haocheng Gu, Hao Cheng, Anjun Ma, Yang Li, Juexin Wang, Dong Xu, Qin Ma
scGNN 2.0: a graph neural network tool for imputation and clustering of single-cell RNA-Seq data. Bioinform. 38 (23) (2022)
Lei Jiang, Yuexu Jiang, Cankun Wang, Clement Essien, Juexin Wang, Anjun Ma, Qin Ma, Dong Xu
Machine learning development environment for single-cell sequencing data analyses. BIBM (2022)
Bin Yu, Cheng Chen, Xiaolin Wang, Zhaomin Yu, Anjun Ma, Bingqiang Liu
Prediction of protein-protein interactions based on elastic net and deep forest. Expert Syst. Appl. 176 (2021)
Zhaoqian Liu, Anjun Ma, Ewy A. Mathé, Marlena Merling, Qin Ma, Bingqiang Liu
Network analyses in microbiome based on high-throughput multi-omics data. Briefings Bioinform. 22 (2) (2021)
Bin Yu, Wenying Qiu, Cheng Chen, Anjun Ma, Jing Jiang, Hongyan Zhou, Qin Ma
SubMito-XGBoost: predicting protein submitochondrial localization by fusing multiple feature information and eXtreme gradient boosting. Bioinform. 36 (4) (2020)
Ren Qi, Anjun Ma, Qin Ma, Quan Zou
Clustering and classification methods for single-cell RNA-sequencing data. Briefings Bioinform. 21 (4) (2020)
Anjun Ma, Cankun Wang, Yuzhou Chang, Faith H. Brennan, Adam McDermaid, Bingqiang Liu, Chi Zhang, Phillip G. Popovich, Qin Ma
IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Juan Xie, Anjun Ma, Yu Zhang, Bingqiang Liu, Sha Cao, Cankun Wang, Jennifer Xu, Chi Zhang, Qin Ma
QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data. Bioinform. 36 (4) (2020)
Anjun Ma, Minxuan Sun, Adam McDermaid, Bingqiang Liu, Qin Ma
MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome. Bioinform. 35 (21) (2019)
Xiaoying Wang, Bin Yu, Anjun Ma, Cheng Chen, Bingqiang Liu, Qin Ma
Protein-protein interaction sites prediction by ensemble random forests with synthetic minority oversampling technique. Bioinform. 35 (14) (2019)
Juan Xie, Anjun Ma, Anne Fennell, Qin Ma, Jing Zhao
It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data. Briefings Bioinform. 20 (4) (2019)
Anjun Ma, Minxuan Sun, Adam McDermaid, Bingqiang Liu, Qin Ma
MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome. Bioinform. 35 (24) (2019)