Chi Zhang

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 24

Top Topics

Top Venues

Nucleic Acids Res.

Publications

Pengtao Dang, Haiqi Zhu, Tingbo Guo, Changlin Wan, Tong Zhao, Paul Salama, Yijie Wang, Sha Cao, Chi Zhang
Generalized Matrix Local Low Rank Representation by Random Projection and Submatrix Propagation. KDD (2023)
Zixuan Zhang, Haiqi Zhu, Pengtao Dang, Jia Wang, Wennan Chang, Xiao Wang, Norah Alghamdi, Alex Lu, Yong Zang, Wenzhuo Wu, Yijie Wang, Yu Zhang, Sha Cao, Chi Zhang
FLUXestimator: a webserver for predicting metabolic flux and variations using transcriptomics data. Nucleic Acids Res. 51 (W1) (2023)
Hyundoo Jeong, Jose Lugo-Martinez, Anna Ritz, Yijie Wang, Chi Zhang
Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC) Workshop (2022). J. Comput. Biol. 30 (7) (2023)
Wennan Chang, Chi Zhang, Sha Cao
. Briefings Bioinform. 23 (4) (2022)
Junyi Zhou, Xiaoyu Lu, Wennan Chang, Changlin Wan, Xiongbin Lu, Chi Zhang, Sha Cao
PLUS: Predicting cancer metastasis potential based on positive and unlabeled learning. PLoS Comput. Biol. 18 (3) (2022)
Wennan Chang, Pengdao Dang, Changlin Wan, Xiaoyu Lu, Yue Fang, Tong Zhao, Yong Zang, Bo Li, Chi Zhang, Sha Cao
Spatially and Robustly Hybrid Mixture Regression Model for Inference of Spatial Dependence. CoRR (2021)
Yuzhou Chang, Carter Allen, Changlin Wan, Dongjun Chung, Chi Zhang, Zihai Li, Qin Ma
IRIS-FGM: an integrative single-cell RNA-Seq interpretation system for functional gene module analysis. Bioinform. 37 (18) (2021)
Changlin Wan, Muhan Zhang, Wei Hao, Sha Cao, Pan Li, Chi Zhang
Principled Hyperedge Prediction with Structural Spectral Features and Neural Networks. CoRR (2021)
Changlin Wan, Dongya Jia, Yue Zhao, Wennan Chang, Sha Cao, Xiao Wang, Chi Zhang
A data denoising approach to optimize functional clustering of single cell RNA-sequencing data. BIBM (2020)
Changlin Wan, Wennan Chang, Tong Zhao, Sha Cao, Chi Zhang
Geometric All-Way Boolean Tensor Decomposition. CoRR (2020)
Anjun Ma, Cankun Wang, Yuzhou Chang, Faith H. Brennan, Adam McDermaid, Bingqiang Liu, Chi Zhang, Phillip G. Popovich, Qin Ma
IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Changlin Wan, Wennan Chang, Tong Zhao, Mengya Li, Sha Cao, Chi Zhang
Fast and Efficient Boolean Matrix Factorization by Geometric Segmentation. AAAI (2020)
Changlin Wan, Wennan Chang, Tong Zhao, Sha Cao, Chi Zhang
Denoising Individual Bias for Fairer Binary Submatrix Detection. CIKM (2020)
Changlin Wan, Wennan Chang, Tong Zhao, Yong Zang, Sha Cao, Chi Zhang
Denoising individual bias for a fairer binary submatrix detection. CoRR (2020)
Wennan Chang, Xinyu Zhou, Yong Zang, Chi Zhang, Sha Cao
A New Algorithm using Component-wise Adaptive Trimming For Robust Mixture Regression. CoRR (2020)
Wennan Chang, Changlin Wan, Yong Zang, Chi Zhang, Sha Cao
Supervised clustering of high dimensional data using regularized mixture modeling. CoRR (2020)
Changlin Wan, Wennan Chang, Tong Zhao, Sha Cao, Chi Zhang
Geometric All-way Boolean Tensor Decomposition. NeurIPS (2020)
Juan Xie, Anjun Ma, Yu Zhang, Bingqiang Liu, Sha Cao, Cankun Wang, Jennifer Xu, Chi Zhang, Qin Ma
QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data. Bioinform. 36 (4) (2020)
Changlin Wan, Wennan Chang, Tong Zhao, Mengya Li, Sha Cao, Chi Zhang
MEBF: a fast and efficient Boolean matrix factorization method. CoRR (2019)
Yu Zhang, Changlin Wan, Pengcheng Wang, Wennan Chang, Yan Huo, Jian Chen, Qin Ma, Sha Cao, Chi Zhang
M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data. BMC Bioinform. (24) (2019)
Yong Zang, Wing Kam Fung, Sha Cao, Hon Keung Tony Ng, Chi Zhang
Robust tests for gene-environment interaction in case-control and case-only designs. Comput. Stat. Data Anal. 129 (2019)
Yu Zhang, Sha Cao, Jing Zhao, Burair Alsaihati, Qin Ma, Chi Zhang
MRHCA: a nonparametric statistics based method for hub and co-expression module identification in large gene co-expression network. Quant. Biol. 6 (1) (2018)
Yu Zhang, Juan Xie, Jinyu Yang, Anne Fennell, Chi Zhang, Qin Ma
QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data. Bioinform. 33 (3) (2017)
Yan Wang, Wei Du, Yanchun Liang, Xin Chen, Chi Zhang, Wei Pang, Ying Xu
PUEPro: A Computational Pipeline for Prediction of Urine Excretory Proteins. ADMA (2016)
Chao Liu, Chi Zhang, Jing Su, Dongsheng Zhang, Sha Cao
Stresses drive a cancer's initiation, progression and metastasis: Critical comments on the book "Cancer Bioinformatics". J. Bioinform. Comput. Biol. 13 (2) (2015)
Chi Zhang, Sha Cao, Ying Xu
Population dynamics inside cancer biomass driven by repeated hypoxia-reoxygenation cycles. Quant. Biol. 2 (3) (2014)