Yuan Luo

ORCID

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 147

Top Venues

CoRR

J. Am. Medical Informatics Assoc.

AMIA

BIBM

Massachusetts Institute of Technology, Cambridge, MA, USA (PHD)

Education History

Massachusetts Institute of Technology, Cambridge, MA, USA

PHD

Publications

Peter Graffy, Lindsay P. Zimmerman, Yuan Luo, Jingzhi Yu, Yuni Choi, Rachel Zmora, Donald Lloyd-Jones, Norrina B. Allen
Longitudinal clustering of Life's Essential 8 health metrics: application of a novel unsupervised learning method in the CARDIA study. J. Am. Medical Informatics Assoc. 31 (2) (2024)
Yawei Li, Xin Wu, Deyu Fang, Yuan Luo
Informing immunotherapy with multi-omics driven machine learning. npj Digit. Medicine 7 (1) (2024)
Matthew McDermott, Anand Dighe, Peter Szolovits, Yuan Luo, Jason Baron
Using machine learning to develop smart reflex testing protocols. J. Am. Medical Informatics Assoc. 31 (2) (2024)
Liang Yao, Jiazhen Peng, Chengsheng Mao, Yuan Luo
Exploring Large Language Models for Knowledge Graph Completion. CoRR (2023)
Yikuan Li, Ramsey M. Wehbe, Faraz S. Ahmad, Hanyin Wang, Yuan Luo
A comparative study of pretrained language models for long clinical text. J. Am. Medical Informatics Assoc. 30 (2) (2023)
Hanyin Wang, Yikuan Li, Meghan R. Hutch, Adrienne S. Kline, Sebastian Otero, Leena B. Mithal, Emily S. Miller, Andrew Naidech, Yuan Luo
Patterns of diverse and changing sentiments towards COVID-19 vaccines: a sentiment analysis study integrating 11 million tweets and surveillance data across over 180 countries. J. Am. Medical Informatics Assoc. 30 (5) (2023)
Alexander Cao, Diego Klabjan, Yuan Luo
Open-set recognition of breast cancer treatments. Artif. Intell. Medicine 135 (2023)
Yikuan Li, Ramsey M. Wehbe, Faraz S. Ahmad, Hanyin Wang, Yuan Luo
A Comparative Study of Pretrained Language Models for Long Clinical Text. CoRR (2023)
Matthew McDermott, Anand Dighe, Peter Szolovits, Yuan Luo, Jason Baron
Using Machine Learning to Develop Smart Reflex Testing Protocols. CoRR (2023)
Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen
Characterizing variability of electronic health record-driven phenotype definitions. J. Am. Medical Informatics Assoc. 30 (3) (2023)
Zheng Yu, Yikuan Li, Joseph Kim, Kaixuan Huang, Yuan Luo, Mengdi Wang
Deep Reinforcement Learning for Cost-Effective Medical Diagnosis. ICLR (2023)
Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Li Shen, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo
AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease. J. Biomed. Informatics 144 (2023)
Yikuan Li, Hanyin Wang, Halid Ziya Yerebakan, Yoshihisa Shinagawa, Yuan Luo
Enhancing Health Data Interoperability with Large Language Models: A FHIR Study. CoRR (2023)
Zheng Yu, Yikuan Li, Joseph Kim, Kaixuan Huang, Yuan Luo, Mengdi Wang
Deep Reinforcement Learning for Cost-Effective Medical Diagnosis. CoRR (2023)
Yikuan Li, Chengsheng Mao, Kaixuan Huang, Hanyin Wang, Zheng Yu, Mengdi Wang, Yuan Luo
Deep Reinforcement Learning for Efficient and Fair Allocation of Health Care Resources. CoRR (2023)
Yanyi Jenny Ding, Zhidi Luo, Mindy Szeto, Yuan Luo, L. Nelson Sanchez-Pinto
Pediatric Sepsis Phenotyping Using Vital Sign Trajectories. BIBM (2023)
Shyam Visweswaran, Yuan Luo, Mor Peleg
Special issue on fairness and inclusion in biomedical informatics research: technical and social perspectives. J. Biomed. Informatics 141 (2023)
Adrienne S. Kline, Vinesh Appadurai, Yuan Luo, Sanjiv J. Shah
Medical Image Deidentification, Cleaning and Compression Using Pylogik. CoRR (2023)
Garrett Eickelberg, Lazaro Nelson Sanchez-Pinto, Adrienne S. Kline, Yuan Luo
Transportability of bacterial infection prediction models for critically ill patients. J. Am. Medical Informatics Assoc. 31 (1) (2023)
Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber
International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine 5 (2022)
Hanyin Wang, Meghan R. Hutch, Yikuan Li, Adrienne S. Kline, Sebastian Otero, Leena B. Mithal, Emily S. Miller, Andrew Naidech, Yuan Luo
Deep Learning Reveals Patterns of Diverse and Changing Sentiments Towards COVID-19 Vaccines Based on 11 Million Tweets. CoRR (2022)
Chengsheng Mao, Liang Yao, Yuan Luo
ImageGCN: Multi-Relational Image Graph Convolutional Networks for Disease Identification With Chest X-Rays. IEEE Trans. Medical Imaging 41 (8) (2022)
Alexander Cao, Diego Klabjan, Yuan Luo
Open-Set Recognition of Breast Cancer Treatments. CoRR (2022)
Yuan Luo
Evaluating the state of the art in missing data imputation for clinical data. Briefings Bioinform. 23 (1) (2022)
Yu Deng, Jennifer A. Pacheco, Anika S. Ghosh, Anh H. Chung, Chengsheng Mao, Joshua C. Smith, Juan Zhao, Wei-Qi Wei, April Barnado, Chad Dorn, Chunhua Weng, Cong Liu, Adam Cordon, Jingzhi Yu, Yacob Tedla, Abel Kho, Rosalind Ramsey-Goldman, Theresa Walunas, Yuan Luo
Natural language processing to identify lupus nephritis phenotype in electronic health records. BMC Medical Informatics Decis. Mak. (2) (2022)
Yikuan Li, Ramsey M. Wehbe, Faraz S. Ahmad, Hanyin Wang, Yuan Luo
Clinical-Longformer and Clinical-BigBird: Transformers for long clinical sequences. CoRR (2022)
Pascal S. Brandt, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Sajjad Abedian, Daniel J. Stone, David Knaack, Jie Xu, Zhenxing Xu, Yifan Peng, Natalie C. Benda, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
Design and validation of a FHIR-based EHR-driven phenotyping toolbox. J. Am. Medical Informatics Assoc. 29 (9) (2022)
Xuan Wang, Harrison G. Zhang, Xin Xiong, Chuan Hong, Griffin M. Weber, Gabriel A. Brat, Clara-Lea Bonzel, Yuan Luo, Rui Duan, Nathan P. Palmer, Meghan R. Hutch, Alba Gutiérrez-Sacristán, Riccardo Bellazzi, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Noelia García-Barrio, Romain Griffier, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Mark S. Keller, Jeffrey G. Klann, Sehi L'Yi, Sara Lozano-Zahonero, Sarah Maidlow, Adeline Makoudjou, Alberto Malovini, Bertrand Moal, Jason H. Moore, Michele Morris, Danielle L. Mowery, Shawn N. Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S. Omenn, Lav P. Patel, Miguel Pedrera-Jiménez, Andrea Prunotto, Malarkodi J. Samayamuthu, Fernando J. Sanz Vidorreta, Emily Schriver, Petra Schubert, Pablo Serrano-Balazote, Andrew M. South, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Patric Tippmann, Shyam Visweswaran, Zongqi Xia, William Yuan, Daniela Zöller, Isaac S. Kohane, Paul Avillach, Zijian Guo, Tianxi Cai
SurvMaximin: Robust federated approach to transporting survival risk prediction models. J. Biomed. Informatics 134 (2022)
Adrienne S. Kline, Yuan Luo
PsmPy: A Package for Retrospective Cohort Matching in Python. EMBC (2022)
Adrienne S. Kline, Hanyin Wang, Yikuan Li, Saya R. Dennis, Meghan Hutch, Zhenxing Xu, Fei Wang, Feixiong Cheng, Yuan Luo
Multimodal Machine Learning in Precision Health. CoRR (2022)
Chengsheng Mao, Jie Xu, Luke V. Rasmussen, Yikuan Li, Prakash Adekkanattu, Jennifer A. Pacheco, Borna Bonakdarpour, Robert Vassar, Guoqian Jiang, Fei Wang, Jyotishman Pathak, Yuan Luo
AD-BERT: Using Pre-trained contextualized embeddings to Predict the Progression from Mild Cognitive Impairment to Alzheimer's Disease. CoRR (2022)
Adrienne S. Kline, Hanyin Wang, Yikuan Li, Saya R. Dennis, Meghan Hutch, Zhenxing Xu, Fei Wang, Feixiong Cheng, Yuan Luo
Multimodal machine learning in precision health: A scoping review. npj Digit. Medicine 5 (2022)
Jingzhi Yu, Jennifer A. Pacheco, Anika S. Ghosh, Yuan Luo, Chunhua Weng, Ning Shang, Barbara Benoit, David S. Carrell, Robert J. Carroll, Ozan Dikilitas, Robert R. Freimuth, Vivian S. Gainer, Hakon Hakonarson, George Hripcsak, Iftikhar J. Kullo, Frank D. Mentch, Shawn N. Murphy, Peggy L. Peissig, Andrea H. Ramirez, Nephi Walton, Wei-Qi Wei, Luke V. Rasmussen
Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Yawei Li, Xin Wu, Ping Yang, Guoqian Jiang, Yuan Luo
Machine Learning for Lung Cancer Diagnosis, Treatment, and Prognosis. Genom. Proteom. Bioinform. 20 (5) (2022)
Hanyin Wang, Yikuan Li, Andrew Naidech, Yuan Luo
Comparison between machine learning methods for mortality prediction for sepsis patients with different social determinants. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Chengsheng Mao, Liang Yao, Yuan Luo
AKI-BERT: a Pre-trained Clinical Language Model for Early Prediction of Acute Kidney Injury. CoRR (2022)
Ye Xue, Diego Klabjan, Yuan Luo
Aggregation Delayed Federated Learning. Big Data (2022)
Griffin M. Weber, Chuan Hong, Zongqi Xia, Nathan P. Palmer, Paul Avillach, Sehi L'Yi, Mark S. Keller, Shawn N. Murphy, Alba Gutiérrez-Sacristán, Clara-Lea Bonzel, Arnaud Serret-Larmande, Antoine Neuraz, Gilbert S. Omenn, Shyam Visweswaran, Jeffrey G. Klann, Andrew M. South, Ne-Hooi Will Loh, Mario Cannataro, Brett K. Beaulieu-Jones, Riccardo Bellazzi, Giuseppe Agapito, Mario Alessiani, Bruce J. Aronow, Douglas S. Bell, Vincent Benoit, Florence T. Bourgeois, Luca Chiovato, Kelly Cho, Arianna Dagliati, Scott L. DuVall, Noelia García-Barrio, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Richard W. Issitt, Molei Liu, Yuan Luo, Kristine E. Lynch, Sarah Maidlow, Alberto Malovini, Kenneth D. Mandl, Chengsheng Mao, Michael E. Matheny, Jason H. Moore, Jeffrey S. Morris, Michele Morris, Danielle L. Mowery, Kee Yuan Ngiam, Lav P. Patel, Miguel Pedrera-Jiménez, Rachel B. Ramoni, Emily Schriver, Petra Schubert, Pablo Serrano-Balazote, Anastasia Spiridou, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Carlo Torti, Enrico M. Trecarichi, Xuan Wang, James R. Aaron, Adem Albayrak, Giuseppe Albi, Anna Alloni, Danilo F. Amendola, François Angoulvant, Anthony L. L. J. Li, Fatima Ashraf, Andrew Atz, Paul Avillach, Paula S. Azevedo, James Balshi, Brett K. Beaulieu-Jones, Antonio Bellasi, Vincent Benoit, Michele Beraghi, José Luis Bernal-Sobrino, Mélodie Bernaux, Romain Bey, Surbhi Bhatnagar, Alvar Javier Blanco-Martínez, Martin Boeker, John Booth, Silvano Bosari, Robert L. Bradford, Gabriel A. Brat, Stéphane Bréant, Nicholas W. Brown, Raffaele Bruno, William A. Bryant, Mauro Bucalo, Emily Bucholz, Anita Burgun, Tianxi Cai, Aldo Carmona, Charlotte Caucheteux, Julien Champ, Krista Y. Chen, Jin Chen, Lorenzo Chiudinelli, Kelly Cho, James J. Cimino, Tiago K. Colicchio, Sylvie Cormont, Sébastien Cossin, Jean B. Craig, Juan Luis Cruz-Bermúdez, Jaime Cruz-Rojo, Mohamad Daniar, Christel Daniel, Priyam Das, Batsal Devkota, Audrey Dionne, Rui Duan, Julien Dubiel, Loic Esteve, Hossein Estiri, Shirley Fan, Robert W. Follett, Thomas Ganslandt, Noelia García-Barrio, Lana X. Garmire, Nils Gehlenborg, Emily J. Getzen, Alon Geva, Tobias Gradinger, Alexandre Gramfort, Romain Griffier, Nicolas Griffon, Olivier Grisel, Alba Gutiérrez-Sacristán, Larry Han, David A. Hanauer, Christian Haverkamp, Derek Y. Hazard, Bing He, Darren W. Henderson, Martin Hilka, Kenneth M. Huling, Meghan R. Hutch, Richard W. Issitt, Anne-Sophie Jannot, Vianney Jouhet, Ramakanth Kavuluru, Chris J. Kennedy, Kate F. Kernan, Daniel A. Key, Katie Kirchoff, Jeffrey G. Klann, Isaac S. Kohane, Ian D. Krantz, Detlef Kraska, Ashok K. Krishnamurthy, Trang T. Le, Judith Leblanc, Guillaume Lemaitre, Leslie Lenert, Damien Leprovost, Molei Liu, Qi Long, Sara Lozano-Zahonero, Sadiqa Mahmood, Sarah Maidlow, Adeline Makoudjou, Anupama Maram, Patricia Martel, Marcelo R. Martins, Jayson S. Marwaha, Aaron J. Masino, Maria Mazzitelli, Arthur Mensch, Marianna Milano, Marcos F. Minicucci, Bertrand Moal, Taha Mohseni Ahooyi, Jason H. Moore, Cinta Moraleda, Jeffrey S. Morris, Karyn L. Moshal, Sajad Mousavi, Douglas A. Murad, Shawn N. Murphy, Thomas Naughton, Carlos Tadeu Breda Neto, Jane Newburger, Kee Yuan Ngiam, Wanjiku F. M. Njoroge, James B. Norman, Jihad Obeid, Marina P. Okoshi, Karen L. Olson, Gilbert S. Omenn, Nina Orlova, Brian Ostasiewski, Nathan P. Palmer, Nicolas Paris, Lav P. Patel, Miguel Pedrera-Jiménez, Ashley C. Pfaff, Emily R. Pfaff, Danielle Pillion, Sara Pizzimenti, Hans-Ulrich Prokosch, Robson A. Prudente, Andrea Prunotto, Víctor Quirós-González, Rachel B. Ramoni, Maryna Raskin, Siegbert Rieg, Gustavo Roig-Domínguez, Pablo Rojo, Paula Rubio-Mayo, Paolo Sacchi, Carlos Sáez, Elisa Salamanca, Malarkodi Jebathilagam Samayamuthu, L. Nelson Sanchez-Pinto, Arnaud Sandrin, Nandhini Santhanam, Janaina C. C. Santos, Fernando J. Sanz Vidorreta, Maria Savino, Jürgen Schüttler, Luigia Scudeller, Neil J. Sebire, Pablo Serrano-Balazote, Patricia Serre, Arnaud Serret-Larmande, Mohsin Shah, Zahra Shakeri Hossein Abad, Domenick Silvio, Piotr Sliz, Jiyeon Son, Charles Sonday, Andrew M. South, Francesca Sperotto, Zachary H. Strasser, Amelia L. M. Tan, Bryce W. Q. Tan, Suzana E. Tanni, Deanne M. Taylor, Ana I. Terriza-Torres, Patric Tippmann, Emma M. S. Toh, Yi-Ju Tseng, Andrew K. Vallejos, Gaël Varoquaux, Margaret E. Vella, Guillaume Verdy, Jill-Jênn Vie, Shyam Visweswaran, Michele Vitacca, Kavishwar B. Wagholikar, Lemuel R. Waitman, Demian Wassermann, Griffin M. Weber, Martin Wolkewitz, Scott Wong, Zongqi Xia, Xin Xiong, Ye Ye, Nadir Yehya, William Yuan, Alberto Zambelli, Harrison G. Zhang, Daniela Zöller, Valentina Zuccaro, Chiara Zucco, Isaac S. Kohane, Tianxi Cai, Gabriel A. Brat
International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality. npj Digit. Medicine 5 (2022)
Chengsheng Mao, Liang Yao, Yuan Luo
MedGCN: Medication recommendation and lab test imputation via graph convolutional networks. J. Biomed. Informatics 127 (2022)
Catherine A. Gao, Plamena Powla, Meghan Hutch, Oluwatosin Akinsola, Yuan Luo
Evaluation of ICU Severity Scores and Mortality Prediction by Race and Ethnicity: A Machine Learning Approach Using MIMIC-IV. AMIA (2022)
Chengsheng Mao, Yuan Luo
Improving Graph Representation Learning with Distribution Preserving. ICDM (2022)
Yu Deng, Jennifer A. Pacheco, Anh H. Chung, Chengsheng Mao, Joshua C. Smith, Juan Zhao, Wei-Qi Wei, April Barnado, Chunhua Weng, Cong Liu, Adam Cordon, Jingzhi Yu, Yacob Tedla, Abel N. Kho, Rosalind Ramsey-Goldman, Theresa Walunas, Yuan Luo
Natural language processing to identify lupus nephritis phenotype in electronic health records. CoRR (2021)
Prakash Adekkanattu, Jennifer A. Pacheco, Joseph Kabariti, Daniel J. Stone, Yue Yu, Parag Goyal, Faraz S. Ahmad, Guoqian Jiang, Yuan Luo, Luke V. Rasmussen, Pascal S. Brandt, Zhenxing Xu, Jie Xu, Fei Wang, Natalie C. Benda, Thomas R. Campion Jr., Jyotishman Pathak
Multi-site Evaluation of Longitudinal Changes in Ejection Fraction in Heart Failure Patients Through Data-driven Phenotyping. AMIA (2021)
Alexander Cao, Yuan Luo, Diego Klabjan
Open-Set Recognition with Gaussian Mixture Variational Autoencoders. AAAI (2021)
Jiyoung Shin, Yikuan Li, Yuan Luo
Early Prediction of Mortality in Critical Care Setting in Sepsis Patients Using Structured Features and Unstructured Clinical Notes. CoRR (2021)
Francisco Y. Cai, Chengsheng Mao, Yuan Luo
Constrained tensor factorization for computational phenotyping and mortality prediction in patients with cancer. CoRR (2021)
Yawei Li, Qingyun Liu, Zexian Zeng, Yuan Luo
Unsupervised clustering analysis of SARS-Cov-2 population structure reveals six major subtypes at early stage across the world. BIBM (2021)
Jeffrey G. Klann, Hossein Estiri, Griffin M. Weber, Bertrand Moal, Paul Avillach, Chuan Hong, Amelia L. M. Tan, Brett K. Beaulieu-Jones, Victor M. Castro, Thomas Maulhardt, Alon Geva, Alberto Malovini, Andrew M. South, Shyam Visweswaran, Michele Morris, Malarkodi J. Samayamuthu, Gilbert S. Omenn, Kee Yuan Ngiam, Kenneth D. Mandl, Martin Boeker, Karen L. Olson, Danielle L. Mowery, Robert W. Follett, David A. Hanauer, Riccardo Bellazzi, Jason H. Moore, Ne-Hooi Will Loh, Douglas S. Bell, Kavishwar B. Wagholikar, Luca Chiovato, Valentina Tibollo, Siegbert Rieg, Anthony L. L. J. Li, Vianney Jouhet, Emily Schriver, Zongqi Xia, Meghan Hutch, Yuan Luo, Isaac S. Kohane, Gabriel A. Brat, Shawn N. Murphy
Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. J. Am. Medical Informatics Assoc. 28 (7) (2021)
Hanyin Wang, Yikuan Li, Andrew Naidech, Yuan Luo
Disparities in Social Determinants among Performances of Mortality Prediction with Machine Learning for Sepsis Patients. CoRR (2021)
Zexian Zeng, Chengsheng Mao, Andy H. Vo, Xiaoyu Li, Janna Ore Nugent, Seema A. Khan, Susan E. Clare, Yuan Luo
Deep learning for cancer type classification and driver gene identification. BMC Bioinform. (4) (2021)
Jiyoung Shin, Yikuan Li, Yuan Luo
Early Prediction of Mortality in Critical Care Setting in Sepsis Patients Using Structured Features and Unstructured Clinical Notes. BIBM (2021)
Yiming Li, Sanjiv J. Shah, Donna Arnett, Ryan Irvin, Yuan Luo
SNPs Filtered by Allele Frequency Improve the Prediction of Hypertension Subtypes. CoRR (2021)
Ye Xue, Diego Klabjan, Yuan Luo
Aggregation Delayed Federated Learning. CoRR (2021)
Adam Sandler, Diego Klabjan, Yuan Luo
Non-Convex Optimization with Spectral Radius Regularization. CoRR (2021)
Hossein Estiri, Yuan Luo, Hongfang Liu, Suzanne Tamang, Harold Lehmann
Addressing Bias in the Application of Machine Learning on Real-World Data. AMIA (2021)
Yiming Li, Sanjiv J. Shah, Donna Arnett, Ryan Irvin, Yuan Luo
SNPs Filtered by Allele Frequency Improve the Prediction of Hypertension Subtypes. BIBM (2021)
Menghan Ding, Yuan Luo
Unsupervised phenotyping of sepsis using nonnegative matrix factorization of temporal trends from a multivariate panel of physiological measurements. BMC Medical Informatics Decis. Mak. (5) (2021)
Yuan Luo, Chengsheng Mao
PANTHER: Pathway Augmented Nonnegative Tensor Factorization for HighER-order Feature Learning. AAAI (2021)
Wenjun Kou, Dustin A. Carlson, Alexandra J. Baumann, Erica Donnan, Yuan Luo, John E. Pandolfino, Mozziyar Etemadi
A deep-learning-based unsupervised model on esophageal manometry using variational autoencoder. Artif. Intell. Medicine 112 (2021)
Jennifer A. Pacheco, Luke V. Rasmussen, Ken Wiley, Thomas N. Person, David J. Cronkite, Sunghwan Sohn, Shawn N. Murphy, Justin H. Gundelach, Vivian S. Gainer, Victor M. Castro, Cong Liu, Todd Lingren, Frank D. Mentch, Agnes S. Sundaresan, Garrett Eickelberg, Valerie Willis, Al'ona Furmanchuk, Roshan Patel, David S. Carrell, Marc S. Williams, Elizabeth W. Karlson, Jodell E. Linder, Yuan Luo, Chunhua Weng, Wei-Qi Wei
Evaluation of the Portability of Natural Language Processing-based Computable Phenotypes in the eMERGE Network. AMIA (2021)
Jiancheng Ye, Liang Yao, Jiahong Shen, Rethavathi Janarthanam, Yuan Luo
Predicting mortality in critically ill patients with diabetes using machine learning and clinical notes. BMC Medical Informatics Decis. Mak. (11) (2020)
Hongyue Sun, Ran Jin, Yuan Luo
Supervised subgraph augmented non-negative matrix factorization for interpretable manufacturing time series data analytics. IISE Trans. 52 (1) (2020)
Yuanjing Ma, Yuan Luo, Hongmei Jiang
A novel normalization and differential abundance test framework for microbiome data. Bioinform. 36 (13) (2020)
Yikuan Li, Hanyin Wang, Yuan Luo
A Comparison of Pre-trained Vision-and-Language Models for Multimodal Representation Learning across Medical Images and Reports. BIBM (2020)
Jie Xu, Fei Wang, Zhenxing Xu, Prakash Adekkanattu, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Yuan Luo, Chengsheng Mao, Jennifer A. Pacheco, Luke V. Rasmussen, Yiye Zhang, Richard Isaacson, Jyotishman Pathak
Identification of Alzheimer's Disease Subtypes from Electronic Health Records Using a Data-Driven Approach. AMIA (2020)
Saya R. Dennis, Tanya Simuni, Yuan Luo
A Predictive Model for Parkinson's Disease Reveals Candidate Gene Sets for Progression Subtype. BIBM (2020)
Yuan Luo, Chengsheng Mao
PANTHER: Pathway Augmented Nonnegative Tensor factorization for HighER-order feature learning. CoRR (2020)
Yu Deng, Anika S. Ghosh, Anh H. Chung, Yacob Tedla, Abel N. Kho, Rosalind Ramsey-Goldman, Yuan Luo, Theresa L. Walunas
Unsupervised learning for systemic lupus erythematosus subtype identification: electronic health record vs registry data. AMIA (2020)
Chengsheng Mao, Liang Yao, Yuan Luo
A Pre-trained Clinical Language Model for Acute Kidney Injury. ICHI (2020)
Pete Yeh, Yiheng Pan, L. Nelson Sanchez-Pinto, Yuan Luo
Hyperchloremia in critically ill patients: association with outcomes and prediction using electronic health record data. BMC Medical Informatics Decis. Mak. (14) (2020)
Hanyin Wang, Yikuan Li, Seema A. Khan, Yuan Luo
Prediction of breast cancer distant recurrence using natural language processing and knowledge-guided convolutional neural network. Artif. Intell. Medicine 110 (2020)
Yuan Luo, Chengsheng Mao
ScanMap: Supervised Confounding Aware Non-negative Matrix Factorization for Polygenic Risk Modeling. MLHC (2020)
Garrett Eickelberg, L. Nelson Sanchez-Pinto, Yuan Luo
Predictive modeling of bacterial infections and antibiotic therapy needs in critically ill adults. J. Biomed. Informatics 109 (2020)
Pascal S. Brandt, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Evan Sholle, Faraz S. Ahmad, Jie Xu, Zhenxing Xu, Jessica S. Ancker, Fei Wang, Yuan Luo, Guoqian Jiang, Jyotishman Pathak, Luke V. Rasmussen
Feasibility of Cross-Platform EHR-Driven Phenotyping Using Clinical Quality Language. AMIA (2020)
Alexander Cao, Yuan Luo, Diego Klabjan
Open-Set Recognition with Gaussian Mixture Variational Autoencoders. CoRR (2020)
Zhenxing Xu, Jingyuan Chou, Xi Sheryl Zhang, Yuan Luo, Tamara Isakova, Prakash Adekkanattu, Jessica S. Ancker, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Luke V. Rasmussen, Jyotishman Pathak, Fei Wang
Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks. J. Biomed. Informatics 102 (2020)
Yikuan Li, Hanyin Wang, Yuan Luo
A Comparison of Pre-trained Vision-and-Language Models for Multimodal Representation Learning across Medical Images and Reports. CoRR (2020)
Chengsheng Mao, Liang Yao, Yuan Luo
Towards Expressive Graph Representation. CoRR (2020)
Yawei Li, Yuan Luo
Performance-weighted-voting model: an ensemble machine learning method for cancer type classification using whole-exome sequencing mutation. Quant. Biol. 8 (4) (2020)
Luke V. Rasmussen, Pascal S. Brandt, Guoqian Jiang, Richard C. Kiefer, Jennifer A. Pacheco, Prakash Adekkanattu, Jessica S. Ancker, Fei Wang, Zhenxing Xu, Jyotishman Pathak, Yuan Luo
Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms. AMIA (2019)
Liang Yao, Chengsheng Mao, Yuan Luo
Graph Convolutional Networks for Text Classification. AAAI (2019)
Himanshu Sharma, Chengsheng Mao, Yizhen Zhang, Haleh Vatani, Liang Yao, Yizhen Zhong, Luke V. Rasmussen, Guoqian Jiang, Jyotishman Pathak, Yuan Luo
Developing a portable natural language processing based phenotyping system. BMC Medical Informatics Decis. Mak. (3) (2019)
Chengsheng Mao, Yuan Zhao, Mengxin Sun, Yuan Luo
Are My EHRs Private Enough? Event-Level Privacy Protection. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (1) (2019)
Pete Yeh, Yiheng Pan, L. Nelson Sanchez-Pinto, Yuan Luo
Using Machine Learning to Predict Hyperchloremia in Critically Ill Patients. BIBM (2019)
Zexian Zeng, Liang Yao, Ankita Roy, Xiaoyu Li, Sasa Espino, Susan E. Clare, Seema A. Khan, Yuan Luo
Identifying Breast Cancer Distant Recurrences from Electronic Health Records Using Machine Learning. J. Heal. Informatics Res. 3 (3) (2019)
Chengsheng Mao, Liang Yao, Yuan Luo
MedGCN: Graph Convolutional Networks for Multiple Medical Tasks. CoRR (2019)
Guoqing Chao, Yuan Luo, Weiping Ding
Recent Advances in Supervised Dimension Reduction: A Survey. Mach. Learn. Knowl. Extr. 1 (1) (2019)
Yuan Luo, Chengsheng Mao, Yiben Yang, Fei Wang, Faraz S. Ahmad, Donna Arnett, Marguerite R. Irvin, Sanjiv J. Shah
Integrating hypertension phenotype and genotype with hybrid non-negative matrix factorization. Bioinform. 35 (8) (2019)
Chengsheng Mao, Liang Yao, Yuan Luo
ImageGCN: Multi-Relational Image Graph Convolutional Networks for Disease Identification with Chest X-rays. CoRR (2019)
Emily Kunce Stroup, Yuan Luo, L. Nelson Sanchez-Pinto
Phenotyping Multiple Organ Dysfunction Syndrome Using Temporal Trends in Critically Ill Children. BIBM (2019)
Zexian Zeng, Yuan Zhao, Mengxin Sun, Andy H. Vo, Justin Starren, Yuan Luo
Rich Text Formatted EHR Narratives: A Hidden and Ignored Trove. MedInfo (2019)
Lindsay P. Zimmerman, Paul Reyfman, Angela D. R. Smith, Zexian Zeng, Abel N. Kho, L. Nelson Sanchez-Pinto, Yuan Luo
Early prediction of acute kidney injury following ICU admission using a multivariate panel of physiological measurements. BMC Medical Informatics Decis. Mak. (1) (2019)
Yifu Li, Ran Jin, Yuan Luo
Classifying relations in clinical narratives using segment graph convolutional and recurrent neural networks (Seg-GCRNs). J. Am. Medical Informatics Assoc. 26 (3) (2019)
Prakash Adekkanattu, Guoqian Jiang, Yuan Luo, Paul R. Kingsbury, Zhenxing Xu, Luke V. Rasmussen, Jennifer A. Pacheco, Richard C. Kiefer, Daniel J. Stone, Pascal S. Brandt, Liang Yao, Yizhen Zhong, Yu Deng, Fei Wang, Jessica S. Ancker, Thomas R. Campion Jr., Jyotishman Pathak
Evaluating the Portability of an NLP System for Processing Echocardiograms: A Retrospective, Multi-site Observational Study. AMIA (2019)
Ye Xue, Diego Klabjan, Yuan Luo
Predicting ICU readmission using grouped physiological and medication trends. Artif. Intell. Medicine 95 (2019)
Ye Xue, Diego Klabjan, Yuan Luo
Mixture-based Multiple Imputation Model for Clinical Data with a Temporal Dimension. CoRR (2019)
Adam Sandler, Diego Klabjan, Yuan Luo
Conditional Hierarchical Bayesian Tucker Decomposition. CoRR (2019)
Liang Yao, Chengsheng Mao, Yuan Luo
KG-BERT: BERT for Knowledge Graph Completion. CoRR (2019)
Liang Yao, Chengsheng Mao, Yuan Luo
Clinical text classification with rule-based features and knowledge-guided convolutional neural networks. BMC Medical Informatics Decis. Mak. (3) (2019)
Ning Shang, Cong Liu, Luke V. Rasmussen, Casey N. Ta, Robert J. Carroll, Barbara Benoit, Todd Lingren, Ozan Dikilitas, Frank D. Mentch, David S. Carrell, Wei-Qi Wei, Yuan Luo, Vivian S. Gainer, Iftikhar J. Kullo, Jennifer A. Pacheco, Hakon Hakonarson, Theresa L. Walunas, Joshua C. Denny, Chunhua Weng
Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. J. Biomed. Informatics 99 (2019)

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Yuan Luo