Umit Topaloglu

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 16

Top Topics

Top Venues

Publications

Seha Ay, Michael Cardei, Anne-Marie Meyer, Wei Zhang, Umit Topaloglu
Improving Equity in Deep Learning Medical Applications with the Gerchberg-Saxton Algorithm. J. Heal. Informatics Res. 8 (2) (2024)
Seha Ay, Michael Cardei, Anne-Marie Meyer, Wei Zhang, Umit Topaloglu
Improving Equity in Deep Learning Medical Applications with the Gerchberg-Saxton Algorithm. ICHI (2023)
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 30 (12) (2023)
Hongyu Zhao, Kun Han, Chao Gao, Vithal Madhira, Umit Topaloglu, Yong Lu, Guangxu Jin
VOC-alarm: mutation-based prediction of SARS-CoV-2 variants of concern. Bioinform. 38 (14) (2022)
Qing Lyu, Sanjeev V. Namjoshi, Emory McTyre, Umit Topaloglu, Richard Barcus, Michael D. Chan, Christina K. Cramer, Waldemar Debinski, Metin N. Gurcan, Glenn J. Lesser, Hui-Kuan Lin, Reginald F. Munden, Boris C. Pasche, Kiran Kumar Solingapuram Sai, Roy E. Strowd, Stephen B. Tatter, Kounosuke Watabe, Wei Zhang, Ge Wang, Christopher T. Whitlow
A transformer-based deep-learning approach for classifying brain metastases into primary organ sites using clinical whole-brain MRI images. Patterns 3 (11) (2022)
Feifan Liu, Noha Sharafeldin, Vithal Madhira, Katie R. Bradwell, Qianqian Song, Benjamin Bates, Yu R. Shao, Jing Su, Alfred Anzalone, Timothym Bergquist, Sarah Cutrona, Ben S. Gerber, Peter N. Robinson, Justin Guinney, Umit Topaloglu
COVID-19 Mortality Prediction among Patients with Cancer Using a Large National Cohort. AMIA (2021)
Mustafa Y. Topaloglu, Elisabeth M. Morrell, Umit Topaloglu
Federated Learning in Healthcare is the Future, But the Problems Are Contemporary. WEBIST (2021)
Maryam Y. Garza, Michael W. Rutherford, Bhargav Adagarla, Eric L. Eisenstein, Karan R. Kumar, Kanecia O. Zimmerman, Umit Topaloglu, Meredith N. Zozus
Evaluating Site-Level Implementations of the HL7 FHIR Standard to Support eSource Data Exchange in Clinical Research. MIE (2021)
Heidi M. Munger Clary, Beverly M. Snively, Umit Topaloglu, Pamela Duncan, James Kimball, Halley Alexander, Gretchen A. Brenes
Pragmatic Patient Reported Outcomes via EHR Patient Portal vs. Telephone: A Pilot Randomized Controlled Trial among Adults with Epilepsy and Anxiety or Depression Symptoms. AMIA (2021)
Mustafa Y. Topaloglu, Elisabeth M. Morrell, Suraj Rajendran, Umit Topaloglu
In the Pursuit of Privacy: The Promises and Predicaments of Federated Learning in Healthcare. Frontiers Artif. Intell. 4 (2021)
Qing Lyu, Sanjeev V. Namjoshi, Emory McTyre, Umit Topaloglu, Richard Barcus, Michael D. Chan, Christina K. Cramer, Waldemar Debinski, Metin N. Gurcan, Glenn J. Lesser, Hui-Kuan Lin, Reginald F. Munden, Boris C. Pasche, Kiran Kumar Solingapuram Sai, Roy E. Strowd, Stephen B. Tatter, Kounosuke Watabe, Wei Zhang, Ge Wang, Christopher T. Whitlow
A transformer-based deep learning approach for classifying brain metastases into primary organ sites using clinical whole brain MRI images. CoRR (2021)
Bhargav Adagarla, Maryam Y. Garza, Karan R. Kumar, Umit Topaloglu, Anita Walden, Kanecia Zimmerman, Meredith N. Zozus, Eric L. Eisenstein
Understanding facilitators and barriers to development and adoption of EHR-to-eCRF technology in multi-site clinical research. AMIA (2020)
Arnav Bhandari, Michael Horvath, Greg Kucera, Umit Topaloglu
Extraction of Diagnosis codes from Health Reports using available NLP tools for a performant implementation in an Academic Medical Center. AMIA (2020)
Qianqian Song, Umit Topaloglu, Jing Su, Wei Zhang
Leveraging Single-cell Data through Graph-based Artificial Intelligence. AMIA (2020)
Maryam Y. Garza, Michael W. Rutherford, Sahiti Myneni, Susan H. Fenton, Anita Walden, Umit Topaloglu, Eric L. Eisenstein, Karan R. Kumar, Kanecia Zimmerman, Mitra Rocca, Scott Gordon, Sam Hume, Zhan Wang, Meredith N. Zozus
Evaluating the Coverage of the HL7® FHIR® Standard to Support eSource Data Exchange Implementations for use in Multi-Site Clinical Research Studies. AMIA (2020)
Martin S. Kohn, Umit Topaloglu, Metin N. Gurcan, Brian Wells, Ajay Dharod
Developing Biomedical Informatics Capability to Support Learning Health System: Challenges and Potential Solutions. AMIA (2019)
Mohammadreza Rezaie, Kenji Yoshigoe, Umit Topaloglu
An Analytics Approach for Adverse Drug Event Discovery. AMIA (2015)
Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, Hari Eswaran, William R. Hogan
Social network analysis of biomedical research collaboration networks in a CTSA institution. J. Biomed. Informatics 52 (2014)
Mengjun Xie, Umit Topaloglu, Thomas Powell, Chao Peng, Jiang Bian
SIM: A smartphone-based identity management framework and its application to Arkansas trauma image repository. BIBM (2013)
Mathias Brochhausen, Martin N. Fransson, Nitin Kanaskar, Mikael Eriksson, Roxana Merino-Martinez, Roger A. Hall, Loreana Norlin, Sanela Kjellqvist, Maria Hortlund, Umit Topaloglu, William R. Hogan, Jan-Eric Litton
Developing a semantically rich ontology for the biobank-administration domain. J. Biomed. Semant. 4 (2013)
Jiang Bian, Mengjun Xie, Umit Topaloglu, Teresa Hudson, William R. Hogan
Understanding biomedicai research collaborations through social network analysis: A case study. BIBM (2013)
Jiang Bian, Umit Topaloglu, Fan Yu
Towards large-scale twitter mining for drug-related adverse events. SHB (2012)
Jiang Bian, Remzi Seker, Umit Topaloglu
A Secure Distributed File System for Medical Image Archiving. SocialCom/PASSAT (2010)
Vincent Yip, Umit Topaloglu
Concept integration from the caTIES to i2b2 using the UMLS semantic network. IHI (2010)
Chia-Chu Chiang, Coskun Bayrak, Remzi Seker, Umit Topaloglu, R. Murat Demirer, Nasrola Samadi, Suleyman Tek, Jiang Bian, GuangXu Zhou, Xiaoran Wang
Design of a Lattice-based Access Control Scheme. SMC (2009)
Mutlu Mete, Leah Hennings, Horace J. Spencer III, Umit Topaloglu
Automatic identification of angiogenesis in double stained images of liver tissue. BMC Bioinform. 10 (S-11) (2009)
Mutlu Mete, Umit Topaloglu
Statistical comparison of color model-classifier pairs in hematoxylin and eosin stained histological images. CIBCB (2009)
Jiang Bian, Remzi Seker, Umit Topaloglu, Coskun Bayrak
Off-the-Record Secure Chat Room. WEBIST (1) (2008)
Jiang Bian, Umit Topaloglu, Remzi Seker, Coskun Bayrak, Chia-Chu Chiang
A role-based secure group communication framework. SoSE (2008)
Umit Topaloglu, Coskun Bayrak
Secure mobile agent execution in virtual environment. Auton. Agents Multi Agent Syst. 16 (1) (2008)
Jiang Bian, Remzi Seker, Umit Topaloglu
Off-the-Record Instant Messaging for Group Conversation. IRI (2007)
James D. Jones, Hemant Joshi, Umit Topaloglu, Eric Nelson
"Who Stole the Bat?" Deception Detection on the Basis of Actions. SMC (2006)
James D. Jones, Hemant Joshi, Umit Topaloglu, Eric Nelson
A Child's Story to Illustrate Automated Reasoning Systems Using Opportunity and History. ISI (2006)
Nitin Kanaskar, Umit Topaloglu, Coskun Bayrak
Globus security model for grid environment. ACM SIGSOFT Softw. Eng. Notes 30 (6) (2005)
Umit Topaloglu, Coskun Bayrak, Nitin Kanaskar
Secure Mobile Agent Deployment and Communication Towards Autonomous Semantic Grid. WRAC (2005)
Umit Topaloglu, Coskun Bayrak
Polymorphic Compression. ISCIS (2005)
Z. G. Altun, Umit Topaloglu, A. V. Saygin, Coskun Bayrak
Process Control via Internet. Trans. SDPS 5 (2) (2001)