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Chen Lin
Publication Activity (10 Years)
Years Active: 2012-2021
Publications (10 Years): 15
Top Topics
Relation Extraction
Temporal Relations
Syntactic Structures
Convolution Kernel
Top Venues
J. Am. Medical Informatics Assoc.
AMIA
BioNLP@ACL
BioNLP
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Publications
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Chen Lin
,
Timothy A. Miller
,
Dmitriy Dligach
,
Steven Bethard
,
Guergana Savova
EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain.
BioNLP@NAACL-HLT
(2021)
Danielle Bitterman
,
Timothy A. Miller
,
David Harris
,
Chen Lin
,
Sean Finan
,
Jeremy L. Warner
,
Raymond Mak
,
Guergana Savova
Extracting Relations between Radiotherapy Treatment Details.
ClinicalNLP@EMNLP
(2020)
Chen Lin
,
Timothy A. Miller
,
Dmitriy Dligach
,
Farig Sadeque
,
Steven Bethard
,
Guergana Savova
A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction.
BioNLP
(2020)
Kristin Wright-Bettner
,
Chen Lin
,
Timothy A. Miller
,
Steven Bethard
,
Dmitriy Dligach
,
Martha Palmer
,
James H. Martin
,
Guergana Savova
Defining and Learning Refined Temporal Relations in the Clinical Narrative.
LOUHI@EMNLP
(2020)
Chen Lin
,
Steven Bethard
,
Dmitriy Dligach
,
Farig Sadeque
,
Guergana Savova
,
Timothy A. Miller
Does BERT need domain adaptation for clinical negation detection?
J. Am. Medical Informatics Assoc.
27 (4) (2020)
Alon Geva
,
Steven H. Abman
,
Shannon F. Manzi
,
Dunbar D. Ivy
,
Mary Mullen
,
John Griffin
,
Chen Lin
,
Guergana K. Savova
,
Kenneth D. Mandl
Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources.
J. Am. Medical Informatics Assoc.
27 (2) (2020)
Alon Geva
,
Jason P. Stedman
,
Guergana Savova
,
Chen Lin
,
Shannon F. Manzi
,
Paul Avillach
,
Kenneth D. Mandl
ADEPT: An End-to-End System for High-Throughput Pharmacovigilance.
AMIA
(2018)
Chen Lin
,
Timothy A. Miller
,
Dmitriy Dligach
,
Hadi Amiri
,
Steven Bethard
,
Guergana Savova
Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction.
Louhi@EMNLP
(2018)
Timothy A. Miller
,
Dmitriy Dligach
,
Steven Bethard
,
Chen Lin
,
Guergana Savova
Towards generalizable entity-centric clinical coreference resolution.
J. Biomed. Informatics
69 (2017)
Chen Lin
,
Timothy A. Miller
,
Dmitriy Dligach
,
Steven Bethard
,
Guergana Savova
Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks.
BioNLP
(2017)
Dmitriy Dligach
,
Timothy A. Miller
,
Chen Lin
,
Steven Bethard
,
Guergana Savova
Neural Temporal Relation Extraction.
EACL (2)
(2017)
Guergana Savova
,
Eugene Tseytlin
,
Sean Finan
,
Melissa Castine
,
Timothy A. Miller
,
Olga Medvedeva
,
David Harris
,
Harry Hochheiser
,
Chen Lin
,
Girish Chavan
,
Rebecca Jacobson
DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records.
AMIA
(2017)
Chen Lin
,
Dmitriy Dligach
,
Timothy A. Miller
,
Steven Bethard
,
Guergana K. Savova
Multilayered temporal modeling for the clinical domain.
J. Am. Medical Informatics Assoc.
23 (2) (2016)
Timothy A. Miller
,
Dmitriy Dligach
,
Chen Lin
,
Steven Bethard
,
Guergana Savova
Feature Portability in Cross-domain Clinical Coreference.
AMIA
(2016)
Chen Lin
,
Timothy A. Miller
,
Dmitriy Dligach
,
Steven Bethard
,
Guergana Savova
Improving Temporal Relation Extraction with Training Instance Augmentation.
BioNLP@ACL
(2016)
Timothy A. Miller
,
Steven Bethard
,
Dmitriy Dligach
,
Chen Lin
,
Guergana Savova
Extracting Time Expressions from Clinical Text.
BioNLP@IJCNLP
(2015)
Chen Lin
,
Elizabeth W. Karlson
,
Dmitriy Dligach
,
Monica P. Ramirez
,
Timothy A. Miller
,
Huan Mo
,
Natalie S. Braggs
,
Andrew Cagan
,
Vivian S. Gainer
,
Joshua C. Denny
,
Guergana K. Savova
Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record.
J. Am. Medical Informatics Assoc.
22 (e1) (2015)
William F. Styler IV
,
Steven Bethard
,
Sean Finan
,
Martha Palmer
,
Sameer Pradhan
,
Piet C. de Groen
,
Bradley James Erickson
,
Timothy A. Miller
,
Chen Lin
,
Guergana K. Savova
,
James Pustejovsky
Temporal Annotation in the Clinical Domain.
Trans. Assoc. Comput. Linguistics
2 (2014)
Chen Lin
,
Timothy A. Miller
,
Alvin Kho
,
Steven Bethard
,
Dmitriy Dligach
,
Sameer Pradhan
,
Guergana Savova
Descending-Path Convolution Kernel for Syntactic Structures.
ACL (2)
(2014)
Timothy A. Miller
,
Steven Bethard
,
Dmitriy Dligach
,
Sameer Pradhan
,
Chen Lin
,
Guergana Savova
Discovering Temporal Narrative Containers in Clinical Text.
BioNLP@ACL
(2013)
Chen Lin
,
Elizabeth W. Karlson
,
Helena Canhão
,
Timothy A. Miller
,
Dmitriy Dligach
,
Pei J. Chen
,
Raúl N. Pérez
,
Yuanyuan Shen
,
Michael E. Weinblatt
,
Nancy A. Shadick
,
Robert M. Plenge
,
Guergana Savova
Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records.
AMIA
(2013)
Timothy A. Miller
,
Dmitriy Dligach
,
Steven Bethard
,
Sameer Pradhan
,
Chen Lin
,
Guergana K. Savova
Discovering Time Expressions in Clinical Text.
AMIA
(2013)
Jiaping Zheng
,
Wendy Webber Chapman
,
Timothy A. Miller
,
Chen Lin
,
Rebecca S. Crowley
,
Guergana K. Savova
A system for coreference resolution for the clinical narrative.
J. Am. Medical Informatics Assoc.
19 (4) (2012)