Chen Lin

Publication Activity (10 Years)

Years Active: 2012-2021
Publications (10 Years): 15

Top Topics

Relation Extraction

Temporal Relations

Syntactic Structures

Convolution Kernel

Top Venues

J. Am. Medical Informatics Assoc.

Publications

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain. BioNLP@NAACL-HLT (2021)
Danielle Bitterman, Timothy A. Miller, David Harris, Chen Lin, Sean Finan, Jeremy L. Warner, Raymond Mak, Guergana Savova
Extracting Relations between Radiotherapy Treatment Details. ClinicalNLP@EMNLP (2020)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Farig Sadeque, Steven Bethard, Guergana Savova
A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction. BioNLP (2020)
Kristin Wright-Bettner, Chen Lin, Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Martha Palmer, James H. Martin, Guergana Savova
Defining and Learning Refined Temporal Relations in the Clinical Narrative. LOUHI@EMNLP (2020)
Chen Lin, Steven Bethard, Dmitriy Dligach, Farig Sadeque, Guergana Savova, Timothy A. Miller
Does BERT need domain adaptation for clinical negation detection? J. Am. Medical Informatics Assoc. 27 (4) (2020)
Alon Geva, Steven H. Abman, Shannon F. Manzi, Dunbar D. Ivy, Mary Mullen, John Griffin, Chen Lin, Guergana K. Savova, Kenneth D. Mandl
Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources. J. Am. Medical Informatics Assoc. 27 (2) (2020)
Alon Geva, Jason P. Stedman, Guergana Savova, Chen Lin, Shannon F. Manzi, Paul Avillach, Kenneth D. Mandl
ADEPT: An End-to-End System for High-Throughput Pharmacovigilance. AMIA (2018)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Hadi Amiri, Steven Bethard, Guergana Savova
Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction. Louhi@EMNLP (2018)
Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Chen Lin, Guergana Savova
Towards generalizable entity-centric clinical coreference resolution. J. Biomed. Informatics 69 (2017)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks. BioNLP (2017)
Dmitriy Dligach, Timothy A. Miller, Chen Lin, Steven Bethard, Guergana Savova
Neural Temporal Relation Extraction. EACL (2) (2017)
Guergana Savova, Eugene Tseytlin, Sean Finan, Melissa Castine, Timothy A. Miller, Olga Medvedeva, David Harris, Harry Hochheiser, Chen Lin, Girish Chavan, Rebecca Jacobson
DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records. AMIA (2017)
Chen Lin, Dmitriy Dligach, Timothy A. Miller, Steven Bethard, Guergana K. Savova
Multilayered temporal modeling for the clinical domain. J. Am. Medical Informatics Assoc. 23 (2) (2016)
Timothy A. Miller, Dmitriy Dligach, Chen Lin, Steven Bethard, Guergana Savova
Feature Portability in Cross-domain Clinical Coreference. AMIA (2016)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
Improving Temporal Relation Extraction with Training Instance Augmentation. BioNLP@ACL (2016)
Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Chen Lin, Guergana Savova
Extracting Time Expressions from Clinical Text. BioNLP@IJCNLP (2015)
Chen Lin, Elizabeth W. Karlson, Dmitriy Dligach, Monica P. Ramirez, Timothy A. Miller, Huan Mo, Natalie S. Braggs, Andrew Cagan, Vivian S. Gainer, Joshua C. Denny, Guergana K. Savova
Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. J. Am. Medical Informatics Assoc. 22 (e1) (2015)
William F. Styler IV, Steven Bethard, Sean Finan, Martha Palmer, Sameer Pradhan, Piet C. de Groen, Bradley James Erickson, Timothy A. Miller, Chen Lin, Guergana K. Savova, James Pustejovsky
Temporal Annotation in the Clinical Domain. Trans. Assoc. Comput. Linguistics 2 (2014)
Chen Lin, Timothy A. Miller, Alvin Kho, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Guergana Savova
Descending-Path Convolution Kernel for Syntactic Structures. ACL (2) (2014)
Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Chen Lin, Guergana Savova
Discovering Temporal Narrative Containers in Clinical Text. BioNLP@ACL (2013)
Chen Lin, Elizabeth W. Karlson, Helena Canhão, Timothy A. Miller, Dmitriy Dligach, Pei J. Chen, Raúl N. Pérez, Yuanyuan Shen, Michael E. Weinblatt, Nancy A. Shadick, Robert M. Plenge, Guergana Savova
Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records. AMIA (2013)
Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Sameer Pradhan, Chen Lin, Guergana K. Savova
Discovering Time Expressions in Clinical Text. AMIA (2013)
Jiaping Zheng, Wendy Webber Chapman, Timothy A. Miller, Chen Lin, Rebecca S. Crowley, Guergana K. Savova
A system for coreference resolution for the clinical narrative. J. Am. Medical Informatics Assoc. 19 (4) (2012)