Matthew E. Monroe

Publication Activity (10 Years)

Years Active: 2004-2019
Publications (10 Years): 3

Top Topics

Mass Spectrometry

Knowledge Discovery Process

Top Venues

Genom. Proteom. Bioinform.

Publications

Geremy Clair, Sarah Reehl, Kelly G. Stratton, Matthew E. Monroe, Malak M. Tfaily, Charles Ansong, Jennifer E. Kyle
Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic data. Bioinform. 35 (21) (2019)
Jian Ma, Cameron P. Casey, Xueyun Zheng, Yehia M. Ibrahim, Christopher S. Wilkins, Ryan S. Renslow, Dennis G. Thomas, Samuel H. Payne, Matthew E. Monroe, Richard D. Smith, Justin G. Teeguarden, Erin S. Baker, Thomas O. Metz
PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association. Bioinform. 33 (17) (2017)
Bryson C. Gibbons, Matthew Chambers, Matthew E. Monroe, David L. Tabb, Samuel H. Payne
Correcting systematic bias and instrument measurement drift with mzRefinery. Bioinform. 31 (23) (2015)
Kevin L. Crowell, Gordon W. Slysz, Erin S. Baker, Brian L. LaMarche, Matthew E. Monroe, Yehia M. Ibrahim, Samuel H. Payne, Gordon A. Anderson, Richard D. Smith
LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets. Bioinform. 29 (21) (2013)
Dong Wang, Surendra Dasari, Matthew Chambers, Jerry D. Holman, Kan Chen, Daniel C. Liebler, Daniel J. Orton, Samuel O. Purvine, Matthew E. Monroe, Chang Y. Chung, Kristie L. Rose, David L. Tabb
Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates. Genom. Proteom. Bioinform. 11 (2) (2013)
Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1 (4) (2013)
Brian L. LaMarche, Kevin L. Crowell, Navdeep Jaitly, Vladislav A. Petyuk, Anuj R. Shah, Ashoka D. Polpitiya, John D. Sandoval, Gary R. Kiebel, Matthew E. Monroe, Stephen J. Callister, Thomas O. Metz, Gordon A. Anderson, Richard D. Smith
MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis. BMC Bioinform. 14 (2013)
Uma K. Aryal, Jana Stöckel, Ravi K. Krovvidi, Marina A. Gritsenko, Matthew E. Monroe, Ronald J. Moore, David W. Koppenaal, Richard D. Smith, Himadri B. Pakrasi, Jon M. Jacobs
Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles. BMC Syst. Biol. 5 (2011)
Anuj R. Shah, Joshua N. Adkins, Douglas J. Baxter, William R. Cannon, Daniel G. Chavarría-Miranda, Sutanay Choudhury, Ian Gorton, Deborah K. Gracio, Todd D. Halter, Navdeep Jaitly, John R. Johnson, Richard T. Kouzes, Matthew C. Macduff, Andrès Márquez, Matthew E. Monroe, Christopher S. Oehmen, William A. Pike, Chad Scherrer, Oreste Villa, Bobbie-Jo M. Webb-Robertson, Paul D. Whitney, Nino Zuljevic
Applications in Data-Intensive Computing. Adv. Comput. 79 (2010)
Anuj R. Shah, Khushbu Agarwal, Erin S. Baker, Mudita Singhal, Anoop M. Mayampurath, Yehia M. Ibrahim, Lars J. Kangas, Matthew E. Monroe, Rui Zhao, Mikhail E. Belov, Gordon A. Anderson, Richard D. Smith
Machine learning based prediction for peptide drift times in ion mobility spectrometry. Bioinform. 26 (13) (2010)
Anuj R. Shah, Navdeep Jaitly, Nino Zuljevic, Matthew E. Monroe, Andrei Liyu, Ashoka D. Polpitiya, Joshua N. Adkins, Mikhail E. Belov, Gordon A. Anderson, Richard D. Smith, Ian Gorton
An Architecture for Real Time Data Acquisition and Online Signal Processing for High Throughput Tandem Mass Spectrometry. eScience (2009)
Matthew E. Monroe, Jason L. Shaw, Don Simone Daly, Joshua N. Adkins, Richard D. Smith
MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features. Comput. Biol. Chem. 32 (3) (2008)
Anoop M. Mayampurath, Navdeep Jaitly, Samuel O. Purvine, Matthew E. Monroe, Kenneth J. Auberry, Joshua N. Adkins, Richard D. Smith
DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra. Bioinform. 24 (7) (2008)
Matthew E. Monroe, Nikola Tolic, Navdeep Jaitly, Jason L. Shaw, Joshua N. Adkins, Richard D. Smith
VIPER: an advanced software package to support high-throughput LC-MS peptide identification. Bioinform. 23 (15) (2007)
Kevin K. Anderson, Matthew E. Monroe, Don Simone Daly
Estimating Probabilities of Peptide Assignments to LC-FTICR-MS Observations. METMBS (2004)