Bingshan Li

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 13

Top Topics

Cancer Detection

Bayesian Framework

Top Venues

Briefings Bioinform.

Publications

Chao Yan, Monika E. Grabowska, Alyson L. Dickson, Bingshan Li, Zhexing Wen, Dan M. Roden, C. Michael Stein, Peter J. Embí, Josh F. Peterson, QiPing Feng, Bradley A. Malin, Wei-Qi Wei
Leveraging generative AI to prioritize drug repurposing candidates for Alzheimer's disease with real-world clinical validation. npj Digit. Medicine 7 (1) (2024)
Hufeng Zhou, Theodore Arapoglou, Xihao Li, Zilin Li, Xiuwen Zheng, Jill Moore, Abhijith Asok, Sushant Kumar, Elizabeth E. Blue, Steven Buyske, Nancy J. Cox, Adam Felsenfeld, Mark Gerstein, Eimear Kenny, Bingshan Li, Tara Cox Matise, Anthony Philippakis, Heidi L. Rehm, Heidi J. Sofia, Grace Snyder, Zhiping Weng, Benjamin M. Neale, Shamil R. Sunyaev, Xihong Lin
FAVOR: functional annotation of variants online resource and annotator for variation across the human genome. Nucleic Acids Res. 51 (D1) (2023)
Ying Ji, Rui Chen, Quan Wang, Qiang Wei, Ran Tao, Bingshan Li
A Bayesian framework to integrate multi-level genome-scale data for Autism risk gene prioritization. BMC Bioinform. 23 (1) (2022)
Qiang Wei, Chao Jin, Yang Wang, Shanshan Guo, Xu Guo, Xiaonan Liu, Jiaze An, Jinliang Xing, Bingshan Li
A computational framework to unify orthogonal information in DNA methylation and copy number aberrations in cell-free DNA for early cancer detection. Briefings Bioinform. 23 (4) (2022)
Hai Yang, Rui Chen, Quan Wang, Qiang Wei, Ying Ji, Xue Zhong, Bingshan Li
TVAR: assessing tissue-specific functional effects of non-coding variants with deep learning. Bioinform. 38 (20) (2022)
Patrick Wu, Scott D. Nelson, Juan Zhao, Cosby A. Stone Jr., QiPing Feng, Qingxia Chen, Eric A. Larson, Bingshan Li, Nancy J. Cox, C. Michael Stein, Elizabeth Phillips, Dan M. Roden, Joshua C. Denny, Wei-Qi Wei
DDIWAS: High-throughput electronic health record-based screening of drug-drug interactions. J. Am. Medical Informatics Assoc. 28 (7) (2021)
Yi Jiang, Gina Giase, Kay Grennan, Annie W. Shieh, Yan Xia, Lide Han, Quan Wang, Qiang Wei, Rui Chen, Sihan Liu, Kevin P. White, Chao Chen, Bingshan Li, Chunyu Liu
DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data. PLoS Comput. Biol. 16 (4) (2020)
Hai Yang, Xiaohui Sun, Yang Sun, Ligang Cui, Bingshan Li
Ultrasound Image-Based Diagnosis of Cirrhosis with an End-to-End Deep Learning model. BIBM (2020)
Hai Yang, Rui Chen, Quan Wang, Qiang Wei, Ying Ji, Guangze Zheng, Xue Zhong, Nancy J. Cox, Bingshan Li
De novo pattern discovery enables robust assessment of functional consequences of non-coding variants. Bioinform. 35 (9) (2019)
Hai Yang, Qiang Wei, Xue Zhong, Hushan Yang, Bingshan Li
Cancer driver gene discovery through an integrative genomics approach in a non-parametric Bayesian framework. Bioinform. 33 (4) (2017)
Yongzhuang Liu, Jian Liu, Jianguo Lu, Jiajie Peng, Liran Juan, Xiaolin Zhu, Bingshan Li, Yadong Wang
Joint detection of copy number variations in parent-offspring trios. Bioinform. 32 (8) (2016)
Lun-Ching Chang, Bingshan Li, Zhou Fang, Scott Vrieze, Matthew McGue, William G. Iacono, George C. Tseng, Wei Chen
A computational method for genotype calling in family-based sequencing data. BMC Bioinform. 17 (2016)
Xiaowei Zhan, Youna Hu, Bingshan Li, Gonçalo R. Abecasis, Dajiang J. Liu
RVTESTS: an efficient and comprehensive tool for rare variant association analysis using sequence data. Bioinform. 32 (9) (2016)
Rui Chen, Qiang Wei, Xiaowei Zhan, Xue Zhong, James S. Sutcliffe, Nancy J. Cox, Edwin H. Cook Jr., Chun Li, Wei Chen, Bingshan Li
A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis. Bioinform. 31 (9) (2015)
Qiang Wei, Xiaowei Zhan, Xue Zhong, Yongzhuang Liu, Yujun Han, Wei Chen, Bingshan Li
mutation calling in parents-offspring trios. Bioinform. 31 (9) (2015)
Yongzhuang Liu, Bingshan Li, Renjie Tan, Xiaolin Zhu, Yadong Wang
mutations in parent-offspring trios. Bioinform. 30 (13) (2014)