William S. Bush

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 14

Top Topics

Association Studies

Gene Regulatory Networks

Correlation Analysis

Top Venues

Publications

Zhenxing Guo, Daoyu Duan, Wen Tang, Julia Zhu, William S. Bush, Liangliang Zhang, Xiaofeng Zhu, Fulai Jin, Hao Feng
magpie: A power evaluation method for differential RNA methylation analysis in N6-methyladenosine sequencing. PLoS Comput. Biol. 20 (2) (2024)
Neel Patel, William S. Bush
Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources. BMC Bioinform. 22 (1) (2021)
Dana C. Crawford, John Lin, Jessica Cooke Bailey, Tyler Kinzy, John R. Sedor, John F. O'Toole, William S. Bush
Frequency of ClinVar Pathogenic Variants in Chronic Kidney Disease Patients Surveyed for Return ofResearch Results at a Cleveland Public Hospital. PSB (2020)
Nicholas R. Wheeler, Penelope Benchek, Brian W. Kunkle, Kara L. Hamilton-Nelson, MikeWarfe, Jeremy R. Fondran, Jonathan L. Haines, William S. Bush
Hadoop and PySpark for Reproducibility and Scalability of Genomic Sequencing Studies. PSB (2020)
William S. Bush, Nicholas Wheeler, Brett K. Beaulieu-Jones, Christian Darabos
Packaging Biocomputing Software to Maximize Distribution and Reuse. PSB (2020)
Mariusz Butkiewicz, Elizabeth E. Blue, Yuk Yee Leung, Xueqiu Jian, Edoardo Marcora, Alan E. Renton, Amanda Kuzma, Li-San Wang, Daniel C. Koboldt, Jonathan L. Haines, William S. Bush
Functional annotation of genomic variants in studies of late-onset Alzheimer's disease. Bioinform. 34 (16) (2018)
R. Michael Sivley, Jonathan H. Sheehan, Jonathan A. Kropski, Joy D. Cogan, Timothy S. Blackwell, John A. Phillips, William S. Bush, Jens Meiler, John A. Capra
Three-dimensional spatial analysis of missense variants in RTEL1 identifies pathogenic variants in patients with Familial Interstitial Pneumonia. BMC Bioinform. 19 (1) (2018)
Alexandra E. Fish, Dana C. Crawford, John A. Capra, William S. Bush
Local ancestry transitions modify snp-trait associations. PSB (2018)
M. Arabnejad, Bryan A. Dawkins, William S. Bush, Bill C. White, A. R. Harkness, Brett A. McKinney
Transition-transversion encoding and genetic relationship metric in ReliefF feature selection improves pathway enrichment in GWAS. BioData Min. 11 (1) (2018)
William S. Bush, Dana C. Crawford, Farren Briggs, Darcy Freedman, Chantel Sloan
Integrating community-level data resources for precision medicine research. PSB (2018)
Robert J. Goodloe, Eric Farber-Eger, Jonathan Boston, Dana C. Crawford, William S. Bush
Reducing Clinical Noise for Body Mass Index Measures Due to Unit and Transcription Errors in the Electronic Health Record. CRI (2017)
Mariusz Butkiewicz, Jonathan L. Haines, William S. Bush
Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants. Bioinform. 33 (10) (2017)
Logan Dumitrescu, Nicole A. Restrepo, Robert J. Goodloe, Jonathan Boston, Eric Farber-Eger, Sarah A. Pendergrass, William S. Bush, Dana C. Crawford
Towards a phenome-wide catalog of human clinical traits impacted by genetic ancestry. BioData Min. 8 (2015)
Jacob B. Hall, Jessica Cooke Bailey, Joshua Hoffman, Margaret A. Pericak-Vance, William K. Scott, Jaclyn Kovach, Stephen G. Schwartz, Anita Agarwal, Milam Brantley, Jonathan L. Haines, William S. Bush
Estimating cumulative pathway effects on risk for age-related macular degeneration using mixed linear models. BMC Bioinform. 16 (2015)
Sabrina L. Mitchell, Jacob B. Hall, Robert J. Goodloe, Jonathan Boston, Eric Farber-Eger, Sarah A. Pendergrass, William S. Bush, Dana C. Crawford
Investigating the relationship between mitochondrial genetic variation and cardiovascular-related traits to develop a framework for mitochondrial phenome-wide association studies. BioData Min. 7 (2014)
Matthew Oetjens, William S. Bush, Kelly A. Birdwell, Holli H. Dilks, Erica A. Bowton, Joshua C. Denny, Russell A. Wilke, Dan M. Roden, Dana C. Crawford
Utilization of an EMR-Biorepository to Identify the Genetic Predictors of Calcineurin-Inhibitor Toxicity in Heart Transplant Recipients. Pacific Symposium on Biocomputing (2014)
William S. Bush, Jonathan L. Haines
Genotype Correlation Analysis Reveals Pathway-Based Functional Disequilibrium and Potential Epistasis in the Human Interactome. EvoApplications (2014)
Wei Xie, Murat Kantarcioglu, William S. Bush, Dana C. Crawford, Joshua C. Denny, Raymond Heatherly, Bradley A. Malin
SecureMA: protecting participant privacy in genetic association meta-analysis. Bioinform. 30 (23) (2014)
Laura K. Wiley, Josh F. Peterson, Joshua C. Denny, William S. Bush
Establishing the Need for Personalized Medicine: Simvastatin Exposure Among a SLCO1B1 Variant Population. AMIA (2013)
R. Michael Sivley, Alexandra E. Fish, William S. Bush
Knowledge-Constrained K-Medoids Clustering of Regulatory Rare Alleles for Burden Tests. EvoBIO (2013)
Laura K. Wiley, R. Michael Sivley, William S. Bush
Rapid storage and retrieval of genomic intervals from a relational database system using nested containment lists. Database J. Biol. Databases Curation 2013 (2013)
Laura K. Wiley, Anushi Shah, Hua Xu, William S. Bush
Research and applications: ICD-9 tobacco use codes are effective identifiers of smoking status. J. Am. Medical Informatics Assoc. 20 (4) (2013)
William S. Bush
Introduction to bioinformatics and computational biology. GECCO (Companion) (2012)
William S. Bush, Jason H. Moore
Chapter 11: Genome-Wide Association Studies. PLoS Comput. Biol. 8 (12) (2012)
Carrie C. Buchanan, Eric Torstenson, William S. Bush, Marylyn D. Ritchie
A comparison of cataloged variation between International HapMap Consortium and 1000 Genomes Project data. J. Am. Medical Informatics Assoc. 19 (2) (2012)
Stephen D. Turner, William S. Bush
Multivariate Analysis of Regulatory Snps: Empowering Personal Genomics by Considering Cis-Epistasis and Heterogeneity. Pacific Symposium on Biocomputing (2011)
William S. Bush, Scott M. Dudek, Marylyn D. Ritchie
Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus. Bioinform. 26 (4) (2010)
William S. Bush, Guanhua Chen, Eric Torstenson, Marylyn D. Ritchie
LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium. BioData Min. 2 (2009)
William S. Bush, Scott M. Dudek, Marylyn D. Ritchie
Biofilter: A Knowledge-Integration System for the Multi-Locus Analysis of Genome-Wide Association Studies. Pacific Symposium on Biocomputing (2009)
Stephen D. Turner, Marylyn D. Ritchie, William S. Bush
Conquering the Needle-in-a-Haystack: How Correlated Input Variables Beneficially Alter the Fitness Landscape for Neural Networks. EvoBIO (2009)
William S. Bush, Todd L. Edwards, Scott M. Dudek, Brett A. McKinney, Marylyn D. Ritchie
Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction. BMC Bioinform. 9 (2008)
Todd L. Edwards, William S. Bush, Stephen D. Turner, Scott M. Dudek, Eric Torstenson, Mike Schmidt, Eden Martin, Marylyn D. Ritchie
Generating Linkage Disequilibrium Patterns in Data Simulations Using genomeSIMLA. EvoBIO (2008)
Marylyn D. Ritchie, Alison A. Motsinger, William S. Bush, Christopher S. Coffey, Jason H. Moore
Genetic programming neural networks: A powerful bioinformatics tool for human genetics. Appl. Soft Comput. 7 (1) (2007)
William S. Bush, Tricia A. Thornton-Wells, Marylyn D. Ritchie
Association Rule Discovery Has the Ability to Model Complex Genetic Effects. CIDM (2007)
William S. Bush, Hava T. Siegelmann
Circadian synchrony in networks of protein rhythm driven neurons. Complex. 12 (6) (2007)
William S. Bush, Scott M. Dudek, Marylyn D. Ritchie
Parallel multifactor dimensionality reduction: a tool for the large-scale analysis of gene-gene interactions. Bioinform. 22 (17) (2006)
William S. Bush, Hava T. Siegelmann
Circadian synchrony in networks of protein rhythm driven neurons. Complex. 12 (1) (2006)
William S. Bush, Alison A. Motsinger, Scott M. Dudek, Marylyn D. Ritchie
Can Neural Network Constraints in GP Provide Power to Detect Genes Associated with Human Disease?. EvoWorkshops (2005)