John S. Aberdeen

Publication Activity (10 Years)

Years Active: 1992-2021
Publications (10 Years): 12

Top Topics

Patient Records

Natural Language

Clinical Practice

Top Venues

J. Am. Medical Informatics Assoc.

Int. J. Medical Informatics

J. Biomed. Informatics

Database J. Biol. Databases Curation

Publications

Luther Karl Branting, Craig Pfeifer, Bradford Brown, Lisa Ferro, John S. Aberdeen, Brandy Weiss, Mark Pfaff, Bill Liao
Scalable and explainable legal prediction. Artif. Intell. Law 29 (2) (2021)
Robyn Kozierok, John S. Aberdeen, Cheryl Clark, Christopher D. Garay, Bradley Goodman, Tonia Korves, Lynette Hirschman, Patricia L. McDermott, Matthew W. Peterson
Assessing Open-Ended Human-Computer Collaboration Systems: Applying a Hallmarks Approach. Frontiers Artif. Intell. 4 (2021)
Robyn Kozierok, John S. Aberdeen, Cheryl Clark, Christopher D. Garay, Bradley Goodman, Tonia Korves, Lynette Hirschman, Patricia L. McDermott, Matthew W. Peterson
Hallmarks of Human-Machine Collaboration: A framework for assessment in the DARPA Communicating with Computers Program. CoRR (2021)
Karl Branting, Carlos Balhana, Craig Pfeifer, John S. Aberdeen, Bradford Brown
Judges Are from Mars, Pro Se Litigants Are from Venus: Predicting Decisions from Lay Text. JURIX (2020)
David S. Carrell, Bradley A. Malin, David J. Cronkite, John S. Aberdeen, Cheryl Clark, Muqun (Rachel) Li, Dikshya Bastakoty, Steve Nyemba, Lynette Hirschman
Resilience of clinical text de-identified with "hiding in plain sight" to hostile reidentification attacks by human readers. J. Am. Medical Informatics Assoc. 27 (9) (2020)
John S. Aberdeen, Samuel Bayer, Cheryl Clark, Meredith Keybl, David Tresner-Kirsch
An annotation and modeling schema for prescription regimens. J. Biomed. Semant. 10 (1) (2019)
David S. Carrell, David J. Cronkite, Muqun (Rachel) Li, Steve Nyemba, Bradley A. Malin, John S. Aberdeen, Lynette Hirschman
The machine giveth and the machine taketh away: a parrot attack on clinical text deidentified with hiding in plain sight. J. Am. Medical Informatics Assoc. 26 (12) (2019)
Stéphane M. Meystre, David S. Carrell, Lynette Hirschman, John S. Aberdeen, Paul Fearn, Valentina Petkov, Jonathan C. Silverstein
Automatic Text De-Identification: How and When is it Acceptable? AMIA (2018)
Muqun Li, David Carrell, John S. Aberdeen, Lynette Hirschman, Jacqueline Kirby, Bo Li, Yevgeniy Vorobeychik, Bradley A. Malin
Optimizing annotation resources for natural language de-identification via a game theoretic framework. J. Biomed. Informatics 61 (2016)
Özlem Uzuner, John S. Aberdeen, Stéphane M. Meystre, Mehmet Kayaalp
State of the Art of Clinical Narrative Report De-Identification and Its Future. AMIA (2015)
Kai Zheng, V. G. Vinod Vydiswaran, Yang Liu, Yue Wang, Amber Stubbs, Özlem Uzuner, Anupama E. Gururaj, Samuel Bayer, John S. Aberdeen, Anna Rumshisky, Serguei Pakhomov, Hongfang Liu, Hua Xu
Ease of adoption of clinical natural language processing software: An evaluation of five systems. J. Biomed. Informatics 58 (2015)
Ritu Khare, John D. Burger, John S. Aberdeen, David Tresner-Kirsch, Theodore J. Corrales, Lynette Hirschman, Zhiyong Lu
Scaling drug indication curation through crowdsourcing. Database J. Biol. Databases Curation 2015 (2015)
Muqun Li, David Carrell, John S. Aberdeen, Lynette Hirschman, Bradley A. Malin
De-identification of clinical narratives through writing complexity measures. Int. J. Medical Informatics 83 (10) (2014)
John D. Burger, Emily Doughty, Ritu Khare, Chih-Hsuan Wei, Rajashree Mishra, John S. Aberdeen, David Tresner-Kirsch, Ben Wellner, Maricel G. Kann, Zhiyong Lu, Lynette Hirschman
Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing. Database J. Biol. Databases Curation 2014 (2014)
Stéphane M. Meystre, Hercules Dalianis, John S. Aberdeen, Bradley A. Malin
Automatic Clinical Text De-Identification: Is It Worth It, and Could It Work for Me? MedInfo (2013)
David A. Hanauer, John S. Aberdeen, Samuel Bayer, Benjamin Wellner, Cheryl Clark, Kai Zheng, Lynette Hirschman
Bootstrapping a de-identification system for narrative patient records: Cost-performance tradeoffs. Int. J. Medical Informatics 82 (9) (2013)
David Carrell, Bradley A. Malin, John S. Aberdeen, Samuel Bayer, Cheryl Clark, Ben Wellner, Lynette Hirschman
Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text. J. Am. Medical Informatics Assoc. 20 (2) (2013)
Sherri L. Condon, Mark Arehart, Dan Parvaz, Gregory A. Sanders, Christy Doran, John S. Aberdeen
Evaluation of 2-way Iraqi Arabic-English speech translation systems using automated metrics. Mach. Transl. 26 (1-2) (2012)
John D. Burger, Emily Doughty, Samuel Bayer, David Tresner-Kirsch, Ben Wellner, John S. Aberdeen, Kyungjoon Lee, Maricel G. Kann, Lynette Hirschman
Validating Candidate Gene-Mutation Relations in MEDLINE Abstracts via Crowdsourcing. DILS (2012)
Sherri L. Condon, Dan Parvaz, John S. Aberdeen, Christy Doran, Andrew Freeman, Marwan Awad
Machine Translation Errors: English and Iraqi Arabic. ACM Trans. Asian Lang. Inf. Process. 10 (1) (2011)
Cheryl Clark, John S. Aberdeen, Matthew Coarr, David Tresner-Kirsch, Ben Wellner, Alexander S. Yeh, Lynette Hirschman
MITRE system for clinical assertion status classification. J. Am. Medical Informatics Assoc. 18 (5) (2011)
Lynette Hirschman, John S. Aberdeen
Measuring Risk and Information Preservation: Toward New Metrics for De-identification of Clinical Texts. Louhi@NAACL-HLT (2010)
John S. Aberdeen, Samuel Bayer, Reyyan Yeniterzi, Benjamin Wellner, Cheryl Clark, David A. Hanauer, Bradley A. Malin, Lynette Hirschman
The MITRE Identification Scrubber Toolkit: Design, training, and assessment. Int. J. Medical Informatics 79 (12) (2010)
Reyyan Yeniterzi, John S. Aberdeen, Samuel Bayer, Benjamin Wellner, Lynette Hirschman, Bradley A. Malin
Effects of personal identifier resynthesis on clinical text de-identification. J. Am. Medical Informatics Assoc. 17 (2) (2010)
Sherri L. Condon, Dan Parvaz, John S. Aberdeen, Christy Doran, Andrew Freeman, Marwan Awad
Evaluation of Machine Translation Errors in English and Iraqi Arabic. LREC (2010)
Sherri L. Condon, Gregory A. Sanders, Dan Parvaz, Alan Rubenstein, Christy Doran, John S. Aberdeen, Beatrice T. Oshika
Normalization for Automated Metrics: English and Arabic Speech Translation. MTSummit (2009)
Sherri L. Condon, Mark Arehart, Christy Doran, Dan Parvaz, John S. Aberdeen, Karine Megerdoomian, Beatrice T. Oshika
Automated metrics for speech translation. PerMIS (2009)
Sherri L. Condon, Jon Phillips, Christy Doran, John S. Aberdeen, Dan Parvaz, Beatrice T. Oshika, Gregory A. Sanders, Craig Schlenoff
Applying Automated Metrics to Speech Translation Dialogs. LREC (2008)
Ben Wellner, Matt Huyck, Scott A. Mardis, John S. Aberdeen, Alexander A. Morgan, Leonid Peshkin, Alexander S. Yeh, Janet Hitzeman, Lynette Hirschman
Research Paper: Rapidly Retargetable Approaches to De-identification in Medical Records. J. Am. Medical Informatics Assoc. 14 (5) (2007)
Marilyn A. Walker, Alexander I. Rudnicky, Rashmi Prasad, John S. Aberdeen, Elizabeth Owen Bratt, John S. Garofolo, Helen Wright Hastie, Audrey N. Le, Bryan L. Pellom, Alexandros Potamianos, Rebecca J. Passonneau, Salim Roukos, Gregory A. Sanders, Stephanie Seneff, David Stallard
DARPA communicator: cross-system results for the 2001 evaluation. INTERSPEECH (2002)
Marilyn A. Walker, Alexander I. Rudnicky, John S. Aberdeen, Elizabeth Owen Bratt, John S. Garofolo, Helen Wright Hastie, Audrey N. Le, Bryan L. Pellom, Alexandros Potamianos, Rebecca J. Passonneau, Rashmi Prasad, Salim Roukos, Gregory A. Sanders, Stephanie Seneff, David Stallard
DARPA communicator evaluation: progress from 2000 to 2001. INTERSPEECH (2002)
John S. Aberdeen, Christine Doran, Laurie E. Damianos, Samuel Bayer, Lynette Hirschman
Finding Errors Automatically in Semantically Tagged Dialogues. HLT (2001)
Christine Doran, John S. Aberdeen, Laurie E. Damianos, Lynette Hirschman
Comparing Several Aspects of Human-Computer and Human-Human Dialogues. SIGDIAL Workshop (2001)
Marilyn A. Walker, John S. Aberdeen, Julie E. Boland, Elizabeth Owen Bratt, John S. Garofolo, Lynette Hirschman, Audrey N. Le, Sungbok Lee, Shrikanth S. Narayanan, Kishore Papineni, Bryan L. Pellom, Joseph Polifroni, Alexandros Potamianos, P. Prabhu, Alexander I. Rudnicky, Gregory A. Sanders, Stephanie Seneff, David Stallard, Steve Whittaker
DARPA communicator dialog travel planning systems: the june 2000 data collection. INTERSPEECH (2001)
Marilyn A. Walker, Lynette Hirschman, John S. Aberdeen
Evaluation for Darpa Communicator Spoken Dialogue Systems. LREC (2000)
David S. Day, John S. Aberdeen, Sasha Caskey, Lynette Hirschman, Patricia Robinson, Marc B. Vilain
Alembic Workbench corpus developrnent tool. LREC (1998)
David S. Day, John S. Aberdeen, Lynette Hirschman, Robyn Kozierok, Patricia Robinson, Marc B. Vilain
Mixed-Initiative Development of Language Processing Systems. ANLP (1997)
John S. Aberdeen, John D. Burger, David S. Day, Lynette Hirschman, David D. Palmer, Patricia Robinson, Marc B. Vilain
MITRE: Description of the Alembic System as used in MET. TIPSTER (1996)
John D. Burger, John S. Aberdeen, David D. Palmer
Information Retrieval and Trainable Natural Language Processing. TREC (1996)
John S. Aberdeen, John D. Burger, David S. Day, Lynette Hirschman, Patricia Robinson, Marc B. Vilain
system used for MUC-6. MUC (1995)
Marc B. Vilain, John D. Burger, John S. Aberdeen, Dennis Connolly, Lynette Hirschman
A model-theoretic coreference scoring scheme. MUC (1995)
John S. Aberdeen, John D. Burger, Dennis Connolly, Susan Roberts, Marc B. Vilain
system as used for MUC-5. MUC (1993)
John S. Aberdeen, John D. Burger, Dennis Connolly, Susan Roberts, Marc B. Vilain
MITRE-Bedford ALEMBIC: MUC-4 test results and analysis. MUC (1992)
John S. Aberdeen, John D. Burger, Dennis Connolly, Susan Roberts, Marc B. Vilain
MITRE-Bedford: description of the ALEMBIC system as used for MUC-4. MUC (1992)