Tom R. Gaunt

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 19

Top Topics

Database And Data Mining

Top Venues

BMC Medical Informatics Decis. Mak.

Publications

Oliver Lloyd, Yi Liu, Tom R. Gaunt
Tensor Factorisation for Polypharmacy Side Effect Prediction. CoRR (2024)
Yi Liu, Benjamin L. Elsworth, Tom R. Gaunt
Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets. Bioinform. 39 (4) (2023)
Oliver Lloyd, Yi Liu, Tom R. Gaunt
Assessing the effects of hyperparameters on knowledge graph embedding quality. J. Big Data 10 (1) (2023)
Oliver Lloyd, Yi Liu, Tom R. Gaunt
Assessing the Effects of Hyperparameters on Knowledge Graph Embedding Quality. CoRR (2022)
Yi Liu, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt
Erratum to: EpiGraphDB: a database and data mining platform for health data science. Bioinform. 37 (2) (2021)
M. K. Sobczyk, Tom R. Gaunt, Lavinia Paternoster
MendelVar: gene prioritization at GWAS loci using phenotypic enrichment of Mendelian disease genes. Bioinform. 37 (1) (2021)
Mark F. Rogers, Tom R. Gaunt, Colin Campbell
CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome. Bioinform. 37 (22) (2021)
Benjamin L. Elsworth, Tom R. Gaunt
MELODI Presto: a fast and agile tool to explore semantic triples derived from biomedical literature. Bioinform. 37 (4) (2021)
Mark F. Rogers, Tom R. Gaunt, Colin Campbell
Prediction of driver variants in the cancer genome via machine learning methodologies. Briefings Bioinform. 22 (4) (2021)
Yi Liu, Benjamin L. Elsworth, Pau Erola, Valeriia Haberland, Gibran Hemani, Matt Lyon, Jie Zheng, Oliver Lloyd, Marina Vabistsevits, Tom R. Gaunt
EpiGraphDB: a database and data mining platform for health data science. Bioinform. 37 (9) (2021)
Alvina G. Lai, Wai Hoong Chang, Constantinos A. Parisinos, Michail Katsoulis, Ruth M. Blackburn, Anoop D. Shah, Vincent Nguyen, Spiros C. Denaxas, George Davey Smith, Tom R. Gaunt, Krishnarajah Nirantharakumar, Murray P. Cox, Donall Forde, Folkert W. Asselbergs, Steve Harris, Sylvia Richardson, Reecha Sofat, Richard J. B. Dobson, Aroon D. Hingorani, Riyaz Patel, Jonathan Sterne, Amitava Banerjee, Alastair K. Denniston, Simon Ball, Neil J. Sebire, Nigam H. Shah, Graham R. Foster, Bryan Williams, Harry Hemingway
An informatics consult approach for generating clinical evidence for treatment decisions. BMC Medical Informatics Decis. Mak. 21 (1) (2021)
Mark F. Rogers, Tom R. Gaunt, Colin Campbell
CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome. Bioinform. 36 (12) (2020)
Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell
FATHMM-XF: accurate prediction of pathogenic point mutations via extended features. Bioinform. 34 (3) (2018)
Hashem A. Shihab, Mark F. Rogers, Michael Ferlaino, Colin Campbell, Tom R. Gaunt
GTB - an online genome tolerance browser. BMC Bioinform. 18 (1) (2017)
Jie Zheng, Santiago Rodríguez, Charles Laurin, Denis Baird, Lea Trela-Larsen, Mesut A. Erzurumluoglu, Yi Zheng, Jon White, Claudia Giambartolomei, Delilah Zabaneh, Richard Morris, Meena Kumari, Juan P. Casas, Aroon D. Hingorani, David M. Evans, Tom R. Gaunt, Ian N. M. Day
HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics. Bioinform. 33 (1) (2017)
Emily Rose Holzinger, Shefali S. Verma, Carrie Colleen Buchanan Moore, Molly A. Hall, Rishika De, Diane Gilbert-Diamond, Matthew B. Lanktree, Nathan Pankratz, Antoinette Amuzu, Amber Burt, Caroline Dale, Scott M. Dudek, Clement E. Furlong, Tom R. Gaunt, Daniel Seung Kim, Helene Riess, Suthesh Sivapalaratnam, Vinicius Tragante, Erik P. A. van Iperen, Ariel Brautbar, David S. Carrell, David R. Crosslin, Gail P. Jarvik, Helena Kuivaniemi, Iftikhar J. Kullo, Eric B. Larson, Laura J. Rasmussen-Torvik, Gerard Tromp, Jens Baumert, Karen J. Cruickshanks, Martin Farrall, Aroon D. Hingorani, G. K. Hovingh, Marcus E. Kleber, Barbara E. Klein, Ronald Klein, Wolfgang Koenig, Leslie A. Lange, Winfried März, Kari E. North, N. Charlotte Onland-Moret, Alex P. Reiner, Philippa J. Talmud, Yvonne T. van der Schouw, James G. Wilson, Mika Kivimäki, Meena Kumari, Jason H. Moore, Fotios Drenos, Folkert W. Asselbergs, Brendan J. Keating, Marylyn D. Ritchie
Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals. BioData Min. 10 (1) (2017)
Michael Ferlaino, Mark F. Rogers, Hashem A. Shihab, Matthew E. Mort, David N. Cooper, Tom R. Gaunt, Colin Campbell
An integrative approach to predicting the functional effects of small indels in non-coding regions of the human genome. BMC Bioinform. 18 (1) (2017)
Hashem A. Shihab, Mark F. Rogers, Colin Campbell, Tom R. Gaunt
HIPred: an integrative approach to predicting haploinsufficient genes. Bioinform. 33 (12) (2017)
Jie Zheng, Mesut A. Erzurumluoglu, Benjamin L. Elsworth, John P. Kemp, Laurence J. Howe, Philip C. Haycock, Gibran Hemani, Katherine Tansey, Charles Laurin, Early Genetics, Lifecourse Epidemiology (EAGLE) Eczema Consortium, Beate St. Pourcain, Nicole M. Warrington, Hilary K. Finucane, Alkes L. Price, Brendan K. Bulik-Sullivan, Verneri Anttila, Lavinia Paternoster, Tom R. Gaunt, David M. Evans, Benjamin M. Neale
LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis. Bioinform. 33 (2) (2017)
Hashem A. Shihab, Mark F. Rogers, Julian Gough, Matthew E. Mort, David N. Cooper, Ian N. M. Day, Tom R. Gaunt, Colin Campbell
An integrative approach to predicting the functional effects of non-coding and coding sequence variation. Bioinform. 31 (10) (2015)
Mark F. Rogers, Colin Campbell, Hashem A. Shihab, Tom R. Gaunt, Matthew E. Mort, David N. Cooper
Sequential data selection for predicting the pathogenic effects of sequence variation. BIBM (2015)
Carlos Fernandez-Lozano, José Antonio Seoane Fernández, Marcos Gestal, Tom R. Gaunt, Julian Dorado, Colin Campbell
Texture classification using feature selection and kernel-based techniques. Soft Comput. 19 (9) (2015)
José A. Seoane, Ian N. M. Day, Colin Campbell, Juan P. Casas, Tom R. Gaunt
Using a Random Forest proximity measure for variable importance stratification in genotypic data. IWBBIO (2014)
José A. Seoane, Ian N. M. Day, Juan P. Casas, Colin Campbell, Tom R. Gaunt
A Random Forest proximity matrix as a new measure for gene annotation. ESANN (2014)
José A. Seoane, Colin Campbell, Ian N. M. Day, Juan P. Casas, Tom R. Gaunt
Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery. PLoS Comput. Biol. 10 (10) (2014)
José A. Seoane, Ian N. M. Day, Tom R. Gaunt, Colin Campbell
A pathway-based data integration framework for prediction of disease progression. Bioinform. 30 (6) (2014)
Carlos Fernandez-Lozano, José A. Seoane, Marcos Gestal, Tom R. Gaunt, Colin Campbell
Texture Classification Using Kernel-Based Techniques. IWANN (1) (2013)
Hashem A. Shihab, Julian Gough, David N. Cooper, Ian N. M. Day, Tom R. Gaunt
Predicting the functional consequences of cancer-associated amino acid substitutions. Bioinform. 29 (12) (2013)
Tom R. Gaunt, Santiago Rodríguez, Ian N. M. Day
Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'. BMC Bioinform. 8 (2007)
Tom R. Gaunt, Santiago Rodríguez, Carlos Zapata, Ian N. M. Day
MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers. BMC Bioinform. 7 (2006)