Steve Horvath

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 3

Top Topics

Microscopic Images

Drug Resistance

Human Immunodeficiency Virus

Comparative Analysis

Top Venues

Frontiers Bioinform.

Briefings Bioinform.

Publications

Mary E. Sehl, Elizabeth Crabb Breen, Roger Shih, Fengxue Li, Joshua Zhang, Peter Langfelder, Steve Horvath, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Beth D. Jamieson
Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV. Frontiers Bioinform. 4 (2024)
Joshua Zhang, Mary E. Sehl, Roger Shih, Elizabeth Crabb Breen, Fengxue Li, Ake T. Lu, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Steve Horvath, Beth D. Jamieson
Effects of highly active antiretroviral therapy initiation on epigenomic DNA methylation in persons living with HIV. Frontiers Bioinform. 4 (2024)
Wubin Ding, Diljeet Kaur, Steve Horvath, Wanding Zhou
Comparative epigenome analysis using Infinium DNA methylation BeadChips. Briefings Bioinform. 24 (1) (2023)
John M. O. Ranola, Peter Langfelder, Kenneth Lange, Steve Horvath
Cluster and propensity based approximation of a network. BMC Syst. Biol. 7 (2013)
Lin Song, Peter Langfelder, Steve Horvath
Random generalized linear model: a highly accurate and interpretable ensemble predictor. BMC Bioinform. 14 (2013)
Austin T. Hilliard, Julie E. Miller, Steve Horvath, Stephanie A. White
Distinct Neurogenomic States in Basal Ganglia Subregions Relate Differently to Singing Behavior in Songbirds. PLoS Comput. Biol. 8 (11) (2012)
Michael C. Oldham, Peter Langfelder, Steve Horvath
Network methods for describing sample relationships in genomic datasets: application to Huntington's disease. BMC Syst. Biol. 6 (2012)
Lin Song, Peter Langfelder, Steve Horvath
Comparison of co-expression measures: mutual information, correlation, and model based indices. BMC Bioinform. 13 (2012)
Jeremy A. Miller, Chaochao Cai, Peter Langfelder, Daniel H. Geschwind, Sunil M. Kurian, Daniel R. Salomon, Steve Horvath
Strategies for aggregating gene expression data: The collapseRows R function. BMC Bioinform. 12 (2011)
Christopher C. Park, Greg D. Gale, Simone de Jong, Anatole Ghazalpour, Brian J. Bennett, Charles R. Farber, Peter Langfelder, Andy Lin, Arshad H. Khan, Eleazar Eskin, Steve Horvath, Aldons J. Lusis, Roel A. Ophoff, Desmond J. Smith
Gene networks associated with conditional fear in mice identified using a systems genetics approach. BMC Syst. Biol. 5 (2011)
Peter Langfelder, Rui Luo, Michael C. Oldham, Steve Horvath
Is My Network Module Preserved and Reproducible? PLoS Comput. Biol. 7 (1) (2011)
Jeanette A. Mumford, Steve Horvath, Michael C. Oldham, Peter Langfelder, Daniel H. Geschwind, Russell A. Poldrack
Detecting network modules in fMRI time series: A weighted network analysis approach. NeuroImage 52 (4) (2010)
Peter Langfelder, Tova Fuller, Steve Horvath
Comparing Robust Methods for Defining Directed Networks and Their Hub Nodes. BIOCOMP (2010)
Peter Langfelder, Steve Horvath
WGCNA: an R package for weighted correlation network analysis. BMC Bioinform. 9 (2008)
Peter Langfelder, Bin Zhang, Steve Horvath
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R. Bioinform. 24 (5) (2008)
Jason E. Aten, Tova Fuller, Aldons J. Lusis, Steve Horvath
Using genetic markers to orient the edges in quantitative trait networks: The NEO software. BMC Syst. Biol. 2 (2008)
Angela P. Presson, Eric M. Sobel, Jeanette C. Papp, Charlyn J. Suarez, Toni Whistler, Mangalathu S. Rajeevan, Suzanne D. Vernon, Steve Horvath
Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome. BMC Syst. Biol. 2 (2008)
Steve Horvath, Jun Dong
Geometric Interpretation of Gene Coexpression Network Analysis. PLoS Comput. Biol. 4 (8) (2008)
Jun Dong, Steve Horvath
Understanding network concepts in modules. BMC Syst. Biol. 1 (2007)
Ai Li, Steve Horvath
Network neighborhood analysis with the multi-node topological overlap measure. Bioinform. 23 (2) (2007)
Peter Langfelder, Steve Horvath
Eigengene networks for studying the relationships between co-expression modules. BMC Syst. Biol. 1 (2007)
Andy M. Yip, Steve Horvath
Gene network interconnectedness and the generalized topological overlap measure. BMC Bioinform. 8 (2007)
Ai Li, Steve Horvath
The Multi-Node Topological Overlap Measure For Gene Neighborhood Analysis. BIOCOMP (2006)
Wei Zhao, Paul Mischel, Marc Carlson, Bin Zhang, Stanley Nelson, Steve Horvath
A Network-Based Gene Screening Approach For Improving the Validation Success of Microarrays. BIOCOMP (2006)
Steve Horvath, Jun Dong, Andy M. Yip
The Relationship Between Intramodular Connectivity and Gene Significance in Co-Expression Networks. BIOCOMP (2006)
Andy M. Yip, Steve Horvath
The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks. BIOCOMP (2006)
Bin Zhang, Steve Horvath
Ridge regression based hybrid genetic algorithms for multi-locus quantitative trait mapping. Int. J. Bioinform. Res. Appl. 1 (3) (2005)