Jason L. Stein

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 9

Top Topics

High Throughput

Microscopy Images

Exhaustive Search

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Ziquan Wei, Tingting Dan, Jiaqi Ding, Carolyn M. McCormick, Felix A. Kyere, Minjeong Kim, David Borland, Jason L. Stein, Guorong Wu
High Throughput Deep Model of 3D Nucleus Instance Segmentation by Stereo Stitching Contextual Gaps. ISBI (2023)
Hervé Lemaître, Yann Le Guen, Amanda K. Tilot, Jason L. Stein, Cathy Philippe, Jean-François Mangin, Simon E. Fisher, Vincent Frouin
Genetic variations within human gained enhancer elements affect human brain sulcal morphology. NeuroImage 265 (2023)
Yue Guo, David Borland, Carolyn M. McCormick, Jason L. Stein, Guorong Wu, Ashok K. Krishnamurthy
Cell Counting with Inverse Distance Kernel and Self-supervised Learning. MOVI@MICCAI (2022)
Yue Guo, Oleh Krupa, Jason L. Stein, Guorong Wu, Ashok K. Krishnamurthy
SAU-Net: A Unified Network for Cell Counting in 2D and 3D Microscopy Images. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Junbo Ma, Oleh Krupa, Madison Rose Glass, Carolyn M. McCormick, David Borland, Minjeong Kim, Jason L. Stein, Guorong Wu
3D Nucleus Instance Segmentation for Whole-Brain Microscopy Images. IPMI (2021)
David Borland, Carolyn M. McCormick, Niyanta K. Patel, Oleh Krupa, Jessica T. Mory, Alvaro A. Beltran, Tala M. Farah, Carla F. Escobar-Tomlienovich, Sydney S. Olson, Minjeong Kim, Guorong Wu, Jason L. Stein
Segmentor: a tool for manual refinement of 3D microscopy annotations. BMC Bioinform. 22 (1) (2021)
Yue Guo, Qian Wang, Oleh Krupa, Jason L. Stein, Guorong Wu, Kira Bradford, Ashok K. Krishnamurthy
Cross Modality Microscopy Segmentation via Adversarial Adaptation. IWBBIO (2) (2019)
Yue Guo, Jason L. Stein, Guorong Wu, Ashok K. Krishnamurthy
SAU-Net: A Universal Deep Network for Cell Counting. BCB (2019)
Qian Wang, Shaoyu Wang, Xiaofeng Zhu, Tianyi Liu, Zachary Humphrey, Vladimir Ghukasyan, Mike Conway, Erik Scott, Giulia Fragola, Kira Bradford, Mark J. Zylka, Ashok K. Krishnamurthy, Jason L. Stein, Guorong Wu
Accurate and High Throughput Cell Segmentation Method for Mouse Brain Nuclei Using Cascaded Convolutional Neural Network. Patch-MI@MICCAI (2017)
Derrek P. Hibar, Sarah E. Medland, Jason L. Stein, Sungeun Kim, Li Shen, Andrew J. Saykin, Greig I. de Zubicaray, Katie McMahon, Grant W. Montgomery, Nicholas G. Martin, Margaret J. Wright, Srdjan Djurovic, Ingrid Agartz, Ole A. Andreassen, Paul M. Thompson
Genetic Clustering on the Hippocampal Surface for Genome-Wide Association Studies. MICCAI (2) (2013)
Derrek P. Hibar, Jason L. Stein, Neda Jahanshad, Omid Kohannim, Arthur W. Toga, Katie McMahon, Greig I. de Zubicaray, Grant W. Montgomery, Nicholas G. Martin, Margaret J. Wright, Michael W. Weiner, Paul M. Thompson
Exhaustive Search of the SNP-SNP Interactome Identifies Epistatic Effects on Brain Volume in Two Cohorts. MICCAI (3) (2013)
Omid Kohannim, Derrek P. Hibar, Neda Jahanshad, Jason L. Stein, Xue Hua, Arthur W. Toga, Clifford R. Jack, Michael W. Weiner, Paul M. Thompson
regularized regression. ISBI (2012)
Evan Lutkenhoff, Katherine H. Karlsgodt, Boris Gutman, Jason L. Stein, Paul M. Thompson, Tyrone D. Cannon, J. David Jentsch
Structural and functional neuroimaging phenotypes in dysbindin mutant mice. NeuroImage 62 (1) (2012)
Maria Vounou, Eva Janousová, Robin Wolz, Jason L. Stein, Paul M. Thompson, Daniel Rueckert, Giovanni Montana
Sparse reduced-rank regression detects genetic associations with voxel-wise longitudinal phenotypes in Alzheimer's disease. NeuroImage 60 (1) (2012)
Omid Kohannim, Derrek P. Hibar, Jason L. Stein, Neda Jahanshad, Clifford R. Jack, Michael Weiner, Arthur W. Toga, Paul M. Thompson
Boosting power to detect genetic associations in imaging using multi-locus, genome-wide scans and ridge regression. ISBI (2011)
Derrek P. Hibar, Jason L. Stein, Omid Kohannim, Neda Jahanshad, Andrew J. Saykin, Li Shen, Sungeun Kim, Nathan Pankratz, Tatiana Foroud, Matthew J. Huentelman, Steven G. Potkin, Clifford R. Jack Jr., Michael W. Weiner, Arthur W. Toga, Paul M. Thompson
Voxelwise gene-wide association study (vGeneWAS): Multivariate gene-based association testing in 731 elderly subjects. NeuroImage 56 (4) (2011)
Derrek P. Hibar, Jason L. Stein, Omid Kohannim, Neda Jahanshad, Clifford R. Jack, Michael Weiner, Arthur W. Toga, Paul M. Thompson
Principal components regression: Multivariate, gene-based tests in imaging genomics. ISBI (2011)
Jason L. Stein, Xue Hua, Jonathan H. Morra, Suh Lee, Derrek P. Hibar, April J. Ho, Alex D. Leow, Arthur W. Toga, Jae Hoon Sul, Hyun Min Kang, Eleazar Eskin, Andrew J. Saykin, Li Shen, Tatiana Foroud, Nathan Pankratz, Matthew J. Huentelman, David W. Craig, Jill D. Gerber, April N. Allen, Jason J. Corneveaux, Dietrich A. Stephan, Jennifer Webster, Bryan M. DeChairo, Steven G. Potkin, Clifford R. Jack Jr., Michael W. Weiner, Paul M. Thompson
Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease. NeuroImage 51 (2) (2010)
Jason L. Stein, Xue Hua, Suh Lee, April J. Ho, Alex D. Leow, Arthur W. Toga, Andrew J. Saykin, Li Shen, Tatiana Foroud, Nathan Pankratz, Matthew J. Huentelman, David W. Craig, Jill D. Gerber, April N. Allen, Jason J. Corneveaux, Bryan M. DeChairo, Steven G. Potkin, Michael W. Weiner, Paul M. Thompson, Alzheimer's Disease Neuroimaging Initiative
Voxelwise genome-wide association study (vGWAS). NeuroImage 53 (3) (2010)
Jason L. Stein, Lisa M. Wiedholz, Danielle S. Bassett, Daniel R. Weinberger, Caroline F. Zink, Venkata S. Mattay, Andreas Meyer-Lindenberg
Corrigendum to "A validated network of effective amygdala connectivity" [NeuroImage 36 (2007) 736-745]. NeuroImage 39 (1) (2008)
Jason L. Stein, Lisa M. Wiedholz, Danielle S. Bassett, Daniel R. Weinberger, Caroline F. Zink, Venkata S. Mattay, Andreas Meyer-Lindenberg
A validated network of effective amygdala connectivity. NeuroImage 36 (3) (2007)