Xianghong Jasmine Zhou

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 3

Top Topics

Gene Expression

Top Venues

J. Comput. Biol.

Nucleic Acids Res.

Publications

Ran Hu, Xianghong Jasmine Zhou, Wenyuan Li
Computational Analysis of High-Dimensional DNA Methylation Data for Cancer Prognosis. J. Comput. Biol. 29 (8) (2022)
Jianrong Li, Chun-Yip Tong, Tsai-Jung Sung, Ting-Yu Kang, Xianghong Jasmine Zhou, Chun-Chi Liu
CMEP: a database for circulating microRNA expression profiling. Bioinform. 35 (17) (2019)
Jianrong Li, Chuan-Hu Sun, Wenyuan Li, Rou-Fang Chao, Chieh-Chen Huang, Xianghong Jasmine Zhou, Chun-Chi Liu
Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells. Nucleic Acids Res. 44 (Database-Issue) (2016)
Quan Chen, Xianghong Jasmine Zhou, Fengzhu Sun
Finding Genetic Overlaps Among Diseases Based on Ranked Gene Lists. J. Comput. Biol. 22 (2) (2015)
Wenhui Wang, Xianghong Jasmine Zhou, Zhenqiu Liu, Fengzhu Sun
Network tuned multiple rank aggregation and applications to gene ranking. BMC Bioinform. 16 (S-1) (2015)
Yu-Ting Tseng, Wenyuan Li, Ching-Hsien Chen, Shi-Hua Zhang, Jeremy J. W. Chen, Xianghong Jasmine Zhou, Chun-Chi Liu
IIIDB: a database for isoform-isoform interactions and isoform network modules. BMC Genom. 16 (S-2) (2015)
Wenyuan Li, Ke Gong, Qingjiao Li, Frank Alber, Xianghong Jasmine Zhou
Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data. Bioinform. 31 (6) (2015)
Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Chao Dai, Wenyuan Li, Juan Liu, Xianghong Jasmine Zhou
Integrating many co-splicing networks to reconstruct splicing regulatory modules. BMC Syst. Biol. 6 (S-1) (2012)
Ting Chen, Paul Marjoram, Fengzhu Sun, Xianghong Jasmine Zhou
Preface: Special Issue. J. Comput. Biol. 19 (6) (2012)
Wenyuan Li, Shi-Hua Zhang, Chun-Chi Liu, Xianghong Jasmine Zhou
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data. Bioinform. 28 (19) (2012)
Wenyuan Li, Chao Dai, Chun-Chi Liu, Xianghong Jasmine Zhou
Algorithm to Identify Frequent Coupled Modules from Two-Layered Network Series: Application to Study Transcription and Splicing Coupling. J. Comput. Biol. 19 (6) (2012)
Wenyuan Li, Chun-Chi Liu, Tong Zhang, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou
Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation. PLoS Comput. Biol. 7 (6) (2011)
Shi-Hua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules. Bioinform. 27 (13) (2011)
Michael R. Mehan, Juan Nunez-Iglesias, Chao Dai, Michael S. Waterman, Xianghong Jasmine Zhou
An integrative modular approach to systematically predict gene-phenotype associations. BMC Bioinform. 11 (S-1) (2010)
Wenyuan Li, Min Xu, Xianghong Jasmine Zhou
Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets. J. Biomed. Informatics 43 (4) (2010)
Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou
An Integrative Network Approach to Map the Transcriptome to the Phenome. J. Comput. Biol. 16 (8) (2009)
Chun-Chi Liu, Jianjun Hu, Mrinal Kalakrishnan, Haiyan Huang, Xianghong Jasmine Zhou
Integrative disease classification based on cross-platform microarray data. BMC Bioinform. 10 (S-1) (2009)
Rutu Mulkar-Mehta, Jerry R. Hobbs, Chun-Chi Liu, Xianghong Jasmine Zhou
Discovering Causal and Temporal Relations in Biomedical Texts. AAAI Spring Symposium: Learning by Reading and Learning to Read (2009)
Ruoming Jin, Scott McCallen, Chun-Chi Liu, Yang Xiang, Eivind Almaas, Xianghong Jasmine Zhou
Identifying Dynamic Network Modules with Temporal and Spatial Constraints. Pacific Symposium on Biocomputing (2009)
Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou
An Integrative Network Approach to Map the Transcriptome to the Phenome. RECOMB (2008)
Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, Xianghong Jasmine Zhou
Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Res. 35 (Database-Issue) (2007)
Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou
A graph-based approach to systematically reconstruct human transcriptional regulatory modules. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Min Xu, Ming-Chih J. Kao, Juan Nunez-Iglesias, Joseph Nevins, Mike West, Xianghong Jasmine Zhou
Characterizing Disease-specific Pathways and Their Coordination by Integrative Microarray Analysis with Application to Cancer. BIOCOMP (2007)
Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou
Systematic discovery of functional modules and context-specific functional annotation of human genome. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Jianjun Hu, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou
Integrative missing value estimation for microarray data. BMC Bioinform. 7 (2006)
Fei Pan, Kiran Kamath, Kangyu Zhang, Sudip Pulapura, Avinash Achar, Juan Nunez-Iglesias, Yu Huang, Xifeng Yan, Jiawei Han, Haiyan Hu, Min Xu, Jianjun Hu, Xianghong Jasmine Zhou
Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. Bioinform. 22 (13) (2006)
Haiyan Hu, Xifeng Yan, Yu Huang, Jiawei Han, Xianghong Jasmine Zhou
Mining coherent dense subgraphs across massive biological networks for functional discovery. ISMB (Supplement of Bioinformatics) (2005)
Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han
Mining Closed Relational Graphs with Connectivity Constraints. ICDE (2005)
Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han
Mining closed relational graphs with connectivity constraints. KDD (2005)
Haiyan Huang, Ming-Chih J. Kao, Xianghong Jasmine Zhou, Jun S. Liu, Wing Hung Wong
Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification. J. Comput. Biol. 11 (1) (2004)