Shi-Hua Zhang

Publication Activity (10 Years)

Years Active: 2006-2016
Publications (10 Years): 1

Top Topics

Sparse Regression

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Wenwen Min, Juan Liu, Shi-Hua Zhang
L0-norm Sparse Graph-regularized SVD for Biclustering. CoRR (2016)
Shi-Hua Zhang, Luonan Chen
Guest Editorial for Special Section on ISB/TBC 2014. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (5) (2015)
Zhen-Ping Li, Rui-Sheng Wang, Shi-Hua Zhang, Xiang-Sun Zhang
Quantitative Function and Algorithm for Community Detection in Bipartite Networks. CoRR (2015)
Wenwen Min, Juan Liu, Fei Luo, Shi-Hua Zhang
A novel two-stage method for identifying microRNA-gene regulatory modules in breast cancer. BIBM (2015)
Yu-Ting Tseng, Wenyuan Li, Ching-Hsien Chen, Shi-Hua Zhang, Jeremy J. W. Chen, Xianghong Jasmine Zhou, Chun-Chi Liu
IIIDB: a database for isoform-isoform interactions and isoform network modules. BMC Genom. 16 (S-2) (2015)
Yu-Qing Qiu, Xue Tian, Shi-Hua Zhang
Infer Metagenomic Abundance and Reveal Homologous Genomes Based on the Structure of Taxonomy Tree. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (5) (2015)
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data. BMC Syst. Biol. 7 (S-2) (2013)
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Junfei Zhao, Xiang-Sun Zhang
Identifying mutated core modules in glioblastoma by integrative network analysis. ISB (2012)
Junfei Zhao, Shi-Hua Zhang, Ling-Yun Wu, Xiang-Sun Zhang
Efficient methods for identifying mutated driver pathways in cancer. Bioinform. 28 (22) (2012)
Wenyuan Li, Shi-Hua Zhang, Chun-Chi Liu, Xianghong Jasmine Zhou
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data. Bioinform. 28 (19) (2012)
Jiang Xie, Shi-Hua Zhang, Tieqiao Wen, Guangtai Ding, Shu Yu, Zhili Gu, Wu Zhang
A Querying Method with Feedback Mechanism for Protein Interaction Network. HISB (2011)
Shi-Hua Zhang, Junfei Zhao, Xiang-Sun Zhang
Co-community Structure in Multiple Evolving Networks CoRR (2011)
Shi-Hua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules. Bioinform. 27 (13) (2011)
Shi-Hua Zhang, Xue-Mei Ning, Chris H. Q. Ding, Xiang-Sun Zhang
Determining modular organization of protein interaction networks by maximizing modularity density. BMC Syst. Biol. 4 (S-2) (2010)
Yu-Qing Qiu, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen
Detecting disease associated modules and prioritizing active genes based on high throughput data. BMC Bioinform. 11 (2010)
Shi-Hua Zhang, Daven Vasishtan, Min Xu, Maya Topf, Frank Alber
A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps. Bioinform. 26 (12) (2010)
Jiang Xie, Weibing Feng, Shi-Hua Zhang, Songbei Li, Guoyong Mao, Luwen Zhang, Tieqiao Wen, Wu Zhang
A Method for Querying Conserved Subnetwork in a Large-Scale Biomolecular Network. HPCA (China) (2009)
Shi-Hua Zhang, Hong-Wei Liu, Xue-Mei Ning, Xiang-Sun Zhang
A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks. Int. J. Data Min. Bioinform. 3 (1) (2009)
Min Xu, Shi-Hua Zhang, Frank Alber
3D Rotation Invariant Features for the Characterization of Molecular Density Maps. BIBM (2009)
Jiguang Wang, Shi-Hua Zhang, Yong Wang, Luonan Chen, Xiang-Sun Zhang
Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases. PLoS Comput. Biol. 5 (9) (2009)
Rui-Sheng Wang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures. Neurocomputing 72 (1-3) (2008)
Rui-Sheng Wang, Shi-Hua Zhang, Xiang-Sun Zhang, Luonan Chen
Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks. ICIC (2) (2007)
Zhen-Ping Li, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Alignment of molecular networks by integer quadratic programming. Bioinform. 23 (13) (2007)
Shi-Hua Zhang, Hong-Wei Liu, Xue-Mei Ning, Xiang-Sun Zhang
A Graph-Theoretic Method for Mining Functional Modules in Large Sparse Protein Interaction Networks. ICDM Workshops (2006)
Shi-Hua Zhang, Xue-Mei Ning, Xiang-Sun Zhang
Identification of functional modules in a PPI network by clique percolation clustering. Comput. Biol. Chem. 30 (6) (2006)
Shi-Hua Zhang, Xue-Mei Ning, Hong-Wei Liu, Xiang-Sun Zhang
Prediction of Protein Complexes Based on Protein Interaction Data and Functional Annotation Data Using Kernel Methods. ICIC (3) (2006)