Yong Wang

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 12

Top Topics

Regulatory Elements

Protein Interaction

Top Venues

BMC Syst. Biol.

Publications

Lixin Ren, Wanbiao Ma, Yong Wang
SpecLoop predicts cell type-specific chromatin loop via transcription factor cooperation. Comput. Biol. Medicine 171 (2024)
Xiangyu Pan, Zhaoxia Ma, Xinqi Sun, Hui Li, Tingting Zhang, Chen Zhao, Nini Wang, Rasmus Heller, Wing Hung Wong, Wen Wang, Yu Jiang, Yong Wang
CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network. Genom. Proteom. Bioinform. 21 (3) (2023)
Yurun Lu, Zhan-Ying Feng, Songmao Zhang, Yong Wang
Annotating regulatory elements by heterogeneous network embedding. Bioinform. 38 (10) (2022)
Guanfa Wang, Yong Wang, Jiawei Zhou
Hydrodynamic Limit of the Boltzmann Equation to the Planar Rarefaction Wave in Three Dimensional Space. SIAM J. Math. Anal. 53 (4) (2021)
Jingxue Xin, Junjun Hao, Lang Chen, Tao Zhang, Lei Li, Luonan Chen, Wenmin Zhao, Xuemei Lu, Peng Shi, Yong Wang
ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor. Quant. Biol. 8 (1) (2020)
Yongcui Wang, Shilong Chen, Luonan Chen, Yong Wang
Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs. PLoS Comput. Biol. 15 (12) (2019)
Yong Wang, Xiang-Sun Zhang, Luonan Chen
Systems biology intertwines with single cell and AI. BMC Bioinform. (7) (2019)
Chuan Chen, Jingxue Xin, Yong Wang, Luonan Chen, Michael K. Ng
A Semisupervised Classification Approach for Multidomain Networks With Domain Selection. IEEE Trans. Neural Networks Learn. Syst. 30 (1) (2019)
Yong Wang, Xiang-Sun Zhang, Luonan Chen
Integrating data- and model-driven strategies in systems biology. BMC Syst. Biol. 12 (4) (2018)
Yong Wang, Xiang-Sun Zhang, Luonan Chen
Understanding biological systems through the lens of data. BMC Syst. Biol. 11 (S-4) (2017)
Yuzhen Guo, Fengying Tao, Zikai Wu, Yong Wang
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations. BMC Syst. Biol. 11 (S-4) (2017)
Yong-Cui Wang, Shi-Long Chen, Nai-Yang Deng, Yong Wang
Computational probing protein-protein interactions targeting small molecules. Bioinform. 32 (2) (2016)
Hui-Jia Li, Yong Wang, Ling-Yun Wu, Junhua Zhang, Xiang-Sun Zhang
Potts model based on a Markov process computation solves the community structure problem effectively. CoRR (2015)
Meng Zou, Zhaoqi Liu, Xiang-Sun Zhang, Yong Wang
NCC-AUC: an AUC optimization method to identify multi-biomarker panel for cancer prognosis from genomic and clinical data. Bioinform. 31 (20) (2015)
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data. BMC Syst. Biol. 7 (S-2) (2013)
Yong Wang, Xiang-Sun Zhang, Luonan Chen
Computational systems biology in the big data era. BMC Syst. Biol. 7 (S-2) (2013)
Yong-Cui Wang, Shi-Long Chen, Nai-Yang Deng, Yong Wang
Network predicting drug's anatomical therapeutic chemical code. Bioinform. 29 (10) (2013)
Junhua Zhang, Shi-Hua Zhang, Yong Wang, Junfei Zhao, Xiang-Sun Zhang
Identifying mutated core modules in glioblastoma by integrative network analysis. ISB (2012)
Yong Wang, Qiao-Feng Wu, Chen Chen, Ling-Yun Wu, Xian-Zhong Yan, ShuGuang Yu, Xiang-Sun Zhang, Fan-Rong Liang
Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection. BMC Syst. Biol. 6 (S-1) (2012)
Guanying Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats. BMC Syst. Biol. 6 (S-1) (2012)
Yong Wang, Xiang-Sun Zhang, Luonan Chen
Modelling biological systems from molecules to dynamical networks. BMC Syst. Biol. 6 (S-1) (2012)
Xian-Wen Ren, Yong Wang, Jiguang Wang, Xiang-Sun Zhang
A unified computational model for revealing and predicting subtle subtypes of cancers. BMC Bioinform. 13 (2012)
Xiang-Sun Zhang, Zhen-Ping Li, Rui-Sheng Wang, Yong Wang
A combinatorial model and algorithm for globally searching community structure in complex networks. J. Comb. Optim. 23 (4) (2012)
Zikai Wu, Yong Wang, Luonan Chen
A new method to identify repositioned drugs for prostate cancer. ISB (2012)
Yong-Cui Wang, Yong Wang, Zhixia Yang, Nai-Yang Deng
Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context. BMC Syst. Biol. 5 (S-1) (2011)
Yong-Cui Wang, Chunhua Zhang, Nai-Yang Deng, Yong Wang
Kernel-based data fusion improves the drug-protein interaction prediction. Comput. Biol. Chem. 35 (6) (2011)
Xian-Wen Ren, Yong-Cui Wang, Yong Wang, Xiang-Sun Zhang, Nai-Yang Deng
Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation. BMC Bioinform. 12 (2011)
Yong Wang, Xiang-Sun Zhang, Luonan Chen
Computational systems biology: integration of sequence, structure, network, and dynamics. BMC Syst. Biol. 5 (S-1) (2011)
Yong Wang, Xiang-Sun Zhang, Luonan Chen
Optimization meets systems biology. BMC Syst. Biol. 4 (S-2) (2010)
Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains. BMC Syst. Biol. 4 (S-2) (2010)
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Prediction of protein-RNA binding sites by a random forest method with combined features. Bioinform. 26 (13) (2010)
Yong Wang, Ling-Yun Wu, Ji-Hong Zhang, Zhong-Wei Zhan, Xiang-Sun Zhang, Luonan Chen
Evaluating Protein Similarity from Coarse Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (4) (2009)
Jiguang Wang, Shi-Hua Zhang, Yong Wang, Luonan Chen, Xiang-Sun Zhang
Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases. PLoS Comput. Biol. 5 (9) (2009)
Zhi-Ping Liu, Yong Wang, Tieqiao Wen, Xiang-Sun Zhang, Weiming Xia, Luonan Chen
Dynamically dysfunctional protein interactions in the development of Alzheimer's disease. SMC (2009)
Rui-Sheng Wang, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures. Neurocomputing 72 (1-3) (2008)
Xing-Ming Zhao, Yong Wang, Luonan Chen, Kazuyuki Aihara
Gene function prediction using labeled and unlabeled data. BMC Bioinform. 9 (2008)
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Protein cavity clustering based on community structure of pocket similarity network. Int. J. Bioinform. Res. Appl. 4 (4) (2008)
Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Inferring transcriptional regulatory networks from high-throughput data. Bioinform. 23 (22) (2007)
Su Li, Jianjun Zhou, Wenzheng Li, Dafang Zhuang, Yong Wang
A novel approach based on the combination image of fraction image and normalized mnf image to urban land use/cover mapping. IGARSS (2007)
Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang
Supervised classification of protein structures based on convex hull representation. Int. J. Bioinform. Res. Appl. 3 (2) (2007)
Zhen-Ping Li, Shi-Hua Zhang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Alignment of molecular networks by integer quadratic programming. Bioinform. 23 (13) (2007)
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang
Predicting gene ontology functions from protein's regional surface structures. BMC Bioinform. 8 (2007)
Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
Analysis on multi-domain cooperation for predicting protein-protein interactions. BMC Bioinform. 8 (2007)
Rui-Sheng Wang, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering. PAKDD Workshops (2007)
Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network. TAMC (2006)
Yong Wang, Trupti Joshi, Dong Xu, Xiang-Sun Zhang, Luonan Chen
Supervised Inference of Gene Regulatory Networks by Linear Programming. ICIC (3) (2006)
Zhen-Ping Li, Yong Wang, Shihua Zhang, Xiang-Sun Zhang, Luonan Chen
Alignment of Protein Interaction Networks by Integer Quadratic Programming. EMBC (2006)
Zikai Wu, Yong Wang, En-Min Feng, Jin-Cheng Zhao
Protein Structure Comparison Based on a Measure of Information Discrepancy. TAMC (2006)
Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen
Inferring gene regulatory networks from multiple microarray datasets. Bioinform. 22 (19) (2006)
Hua Chen, Dafang Zhuang, Su Li, Runhe Shi, Yong Wang, Xinfang Yu
A comparison of university of Maryland 1km land cover dataset and a land cover dataset in China. IGARSS (2005)
Su Li, Dafang Zhuang, Runhe Shi, Yong Wang
Monitoring the biophysical composition changes of urban environments using normalized spectral mixture analysis. IGARSS (2005)
Xiang-Sun Zhang, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, Luonan Chen
Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping. J. Bioinform. Comput. Biol. 3 (2) (2005)
Yong Wang, Dafang Zhuang, Runhe Shi, Su Li
A WebGIS-based system model of vehicle monitoring central platform. IGARSS (2005)