Ling-Yun Wu

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 12

Top Topics

Supervised Learning

Top Venues

Briefings Bioinform.

Nat. Mac. Intell.

Publications

Zhichao Hou, Jiacheng Leng, Jiating Yu, Zheng Xia, Ling-Yun Wu
PathExpSurv: pathway expansion for explainable survival analysis and disease gene discovery. BMC Bioinform. 24 (1) (2023)
Tao Ren, Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du, Xiwei Wu, Mara H. Sherman, Paul T. Spellman, Lisa M. Coussens, Andrew C. Adey, Gordon B. Mills, Ling-Yun Wu, Zheng Xia
Author Correction: Supervised learning of high-confidence phenotypic subpopulations from single-cell data. Nat. Mac. Intell. 5 (6) (2023)
Tao Ren, Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du, Xiwei Wu, Mara H. Sherman, Paul T. Spellman, Lisa M. Coussens, Andrew C. Adey, Gordon B. Mills, Ling-Yun Wu, Zheng Xia
Supervised learning of high-confidence phenotypic subpopulations from single-cell data. Nat. Mac. Intell. 5 (5) (2023)
Yong Lu, Gang Xue, Ningbo Zheng, Kun Han, Wenzhong Yang, Rui-Sheng Wang, Ling-Yun Wu, Lance D. Miller, Timothy Pardee, Pierre L. Triozzi, Hui-Wen Lo, Kounosuke Watabe, Stephen T. C. Wong, Boris C. Pasche, Wei Zhang, Guangxu Jin
hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy. Briefings Bioinform. 23 (2) (2022)
Jiacheng Leng, Ling-Yun Wu
Interaction-based transcriptome analysis via differential network inference. Briefings Bioinform. 23 (6) (2022)
Jiacheng Leng, Ling-Yun Wu
Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs. Bioinform. 38 (3) (2022)
Can Jin, Xin Peng, Qing Liu, Xinhan Ye, Lang Chen, Qiuyue Yuan, Xiang-Sun Zhang, Ling-Yun Wu, Yong Wang
An Optimization Method for Calibrating Wireline Conveyance Tension. CSDM Asia / CSDM (2021)
Jiating Yu, Jiacheng Leng, Ling-Yun Wu
Network Refinement: A unified framework for enhancing signal or removing noise of networks. CoRR (2021)
Jiating Yu, Ling-Yun Wu
Understanding the network formation pattern for better link prediction. CoRR (2021)
Duanchen Sun, Xian-Wen Ren, Eszter Ari, Tamás Korcsmáros, Peter Csermely, Ling-Yun Wu
Discovering cooperative biomarkers for heterogeneous complex disease diagnoses. Briefings Bioinform. 20 (1) (2019)
Duanchen Sun, Yinliang Liu, Xiang-Sun Zhang, Ling-Yun Wu
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis. BMC Syst. Biol. 11 (S-4) (2017)
Zhi-Ping Liu, Shutang Liu, Ruitang Chen, Xiaopeng Huang, Ling-Yun Wu
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces. BMC Bioinform. 18 (1) (2017)
Hui-Jia Li, Yong Wang, Ling-Yun Wu, Junhua Zhang, Xiang-Sun Zhang
Potts model based on a Markov process computation solves the community structure problem effectively. CoRR (2015)
Junhua Zhang, Ling-Yun Wu, Xiang-Sun Zhang, Shihua Zhang
Discovery of co-occurring driver pathways in cancer. BMC Bioinform. 15 (2014)
Peter Csermely, András London, Ling-Yun Wu, Brian Uzzi
Structure and dynamics of core-periphery networks. CoRR (2013)
Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang
Corbi: a new R package for biological network alignment and querying. BMC Syst. Biol. 7 (S-2) (2013)
Peter Csermely, András London, Ling-Yun Wu, Brian Uzzi
Structure and dynamics of core/periphery networks. J. Complex Networks 1 (2) (2013)
Yong Wang, Qiao-Feng Wu, Chen Chen, Ling-Yun Wu, Xian-Zhong Yan, ShuGuang Yu, Xiang-Sun Zhang, Fan-Rong Liang
Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection. BMC Syst. Biol. 6 (S-1) (2012)
Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang
CNetA: Network alignment by combining biological and topological features. ISB (2012)
Junfei Zhao, Shi-Hua Zhang, Ling-Yun Wu, Xiang-Sun Zhang
Efficient methods for identifying mutated driver pathways in cancer. Bioinform. 28 (22) (2012)
Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang
An efficient network querying method based on conditional random fields. Bioinform. 27 (22) (2011)
Zheng Xia, Ling-Yun Wu, Xiaobo Zhou, Stephen T. C. Wong
Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces. BMC Syst. Biol. 4 (S-2) (2010)
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Prediction of protein-RNA binding sites by a random forest method with combined features. Bioinform. 26 (13) (2010)
Xian-Wen Ren, Xiaobo Zhou, Ling-Yun Wu, Xiang-Sun Zhang
An information-flow-based model with dissipation, saturation and direction for active pathway inference. BMC Syst. Biol. 4 (2010)
Yong Wang, Ling-Yun Wu, Ji-Hong Zhang, Zhong-Wei Zhan, Xiang-Sun Zhang, Luonan Chen
Evaluating Protein Similarity from Coarse Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (4) (2009)
Ling-Yun Wu, Xiaobo Zhou, Fuhai Li, Xiaorong Yang, Chung-Che Chang, Stephen T. C. Wong
Conditional random pattern algorithm for LOH inference and segmentation. Bioinform. 25 (1) (2009)
Ling-Yun Wu, Zhen-Ping Li, Rui-Sheng Wang, Xiang-Sun Zhang, Luonan Chen
Self-organizing map approaches for the haplotype assembly problem. Math. Comput. Simul. 79 (10) (2009)
Ji-Hong Zhang, Ling-Yun Wu, Jian Chen, Xiang-Sun Zhang
A fast haplotype inference method for large population genotype data. Comput. Stat. Data Anal. 52 (11) (2008)
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Protein cavity clustering based on community structure of pocket similarity network. Int. J. Bioinform. Res. Appl. 4 (4) (2008)
Yong Wang, Ling-Yun Wu, Luonan Chen, Xiang-Sun Zhang
Supervised classification of protein structures based on convex hull representation. Int. J. Bioinform. Res. Appl. 3 (2) (2007)
Ji-Hong Zhang, Ling-Yun Wu, Yu-Ying Zhao, Xiang-Sun Zhang
An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors. Eur. J. Oper. Res. 182 (1) (2007)
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang
Predicting gene ontology functions from protein's regional surface structures. BMC Bioinform. 8 (2007)
Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
Analysis on multi-domain cooperation for predicting protein-protein interactions. BMC Bioinform. 8 (2007)
Ling-Yun Wu, Xiang-Sun Zhang, Ju-Liang Zhang
Capacitated facility location problem with general setup cost. Comput. Oper. Res. 33 (2006)
Yong Wang, Ling-Yun Wu, Xiang-Sun Zhang, Luonan Chen
Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network. TAMC (2006)
Rui-Sheng Wang, Ling-Yun Wu, Zhen-Ping Li, Xiang-Sun Zhang
Haplotype reconstruction from SNP fragments by minimum error correction. Bioinform. 21 (10) (2005)
Yu-Ying Zhao, Ling-Yun Wu, Ji-Hong Zhang, Rui-Sheng Wang, Xiang-Sun Zhang
Haplotype assembly from aligned weighted SNP fragments. Comput. Biol. Chem. 29 (4) (2005)
Xiang-Sun Zhang, Yong Wang, Zhong-Wei Zhan, Ling-Yun Wu, Luonan Chen
Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping. J. Bioinform. Comput. Biol. 3 (2) (2005)
Ji-Hong Zhang, Ling-Yun Wu, Xiang-Sun Zhang
Reconstruction of DNA sequencing by hybridization. Bioinform. 19 (1) (2003)