Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces.
Zhi-Ping LiuShutang LiuRuitang ChenXiaopeng HuangLing-Yun WuPublished in: BMC Bioinform. (2017)
Keyphrases
- structural motifs
- rna molecules
- protein sequences
- rna sequences
- rna secondary structures
- cis regulatory
- secondary structure
- protein folding
- protein classification
- pattern recognition
- motif finding
- remote homology detection
- multiple alignment
- genome wide
- genome sequences
- computational methods
- feature extraction
- multiple sequence alignment
- recognition rate
- dna binding
- human genome
- sequence alignment
- string kernels
- amino acids
- protein function
- dna sequences
- nucleotide sequences
- object recognition
- structural features
- computational biology
- protein structure
- gene regulation
- high throughput
- sequence data
- amino acid sequences
- sequence analysis
- support vector machine
- protein structure prediction
- multiple sequence alignments
- edit distance
- sequence similarity
- biological sequences