Zhi-Ping Liu

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 35

Top Topics

Gene Regulatory

Gene Expression

Machine Learning

Multivariate Regression

Top Venues

Publications

Dezhen Zhang, Shuhua Gao, Zhi-Ping Liu, Rui Gao
LogicGep: Boolean networks inference using symbolic regression from time-series transcriptomic profiling data. Briefings Bioinform. 25 (4) (2024)
Chuan-Yuan Wang, Zhi-Ping Liu
Network Activity Evaluation Reveals Significant Gene Regulatory Architectures During SARS-CoV-2 Viral Infection From Dynamic scRNA-seq Data. IEEE J. Biomed. Health Informatics 28 (4) (2024)
Yanqiu Wang, Tong Wang, Yi Cao, Xu Qiao, Xianhua Han, Zhi-Ping Liu
TopMarker: Computational screening biomarkers of hepatocellular carcinoma from transcriptome and interactome based on differential network topological parameters. Comput. Biol. Chem. 112 (2024)
Yunhai Li, Pengpai Li, Duanchen Sun, Zhi-Ping Liu
Predicting Drug-Target Affinity Using Protein Pocket and Graph Convolution Network. ISBRA (1) (2024)
Jiaxin Yang, Chuan-Yuan Wang, Duanchen Sun, Zhi-Ping Liu
Multi-objective Optimization-Based Approach for Detection of Breast Cancer Biomarkers. ICIC (3) (2023)
Lingyu Li, Liangjie Sun, Guangyi Chen, Chi-Wing Wong, Wai-Ki Ching, Zhi-Ping Liu
LogBTF: gene regulatory network inference using Boolean threshold network model from single-cell gene expression data. Bioinform. 39 (5) (2023)
Chuan-Yuan Wang, Shiyu Xu, Duanchen Sun, Zhi-Ping Liu
ActivePPI: quantifying protein-protein interaction network activity with Markov random fields. Bioinform. 39 (9) (2023)
Lingyu Li, Zhi-Ping Liu
Biomarker discovery from high-throughput data by connected network-constrained support vector machine. Expert Syst. Appl. 226 (2023)
Zhi-Ping Liu
Editorial: Insights in integrative bioinformatics-2021. Frontiers Bioinform. 3 (2023)
Min-Gang Zhou, Zhi-Ping Liu, Hua-Lei Yin, Chen-Long Li, Tong-Kai Xu, Zeng-Bing Chen
Quantum Neural Network for Quantum Neural Computing. CoRR (2023)
Chunxiao Zhang, Pengpai Li, Duanchen Sun, Zhi-Ping Liu
MOFNet: A Deep Learning Framework of Integrating Multi-omics Data for Breast Cancer Diagnosis. ICIC (3) (2023)
Zhi-Ping Liu, Min-Gang Zhou, Wen-Bo Liu, Chen-Long Li, Jie Gu, Hua-Lei Yin, Zeng-Bing Chen
Automated machine learning for secure key rate in discrete-modulated continuous-variable quantum key distribution. CoRR (2022)
Lingyu Li, Zhi-Ping Liu
A connected network-regularized logistic regression model for feature selection. Appl. Intell. 52 (10) (2022)
Chuan-Yuan Wang, Shiyu Xu, Zhi-Ping Liu
Evaluating Gene Regulatory Network Activity From Dynamic Expression Data by Regularized Constraint Programming. IEEE J. Biomed. Health Informatics 26 (11) (2022)
Dawei Li, Zhi-Ping Liu
Predicting Box-Office Markets with Machine Learning Methods. Entropy 24 (5) (2022)
Yijuan Wang, Zhi-Ping Liu
Identifying biomarkers for breast cancer by gene regulatory network rewiring. BMC Bioinform. (12) (2022)
Zishuang Zhang, Chenxi Sun, Zhi-Ping Liu
Discovering biomarkers of hepatocellular carcinoma from single-cell RNA sequencing data by cooperative games on gene regulatory network. J. Comput. Sci. 65 (2022)
Lingyu Li, Wai-Ki Ching, Zhi-Ping Liu
Robust biomarker screening from gene expression data by stable machine learning-recursive feature elimination methods. Comput. Biol. Chem. 100 (2022)
Guoqing Zhao, Pengpai Li, Zhi-Ping Liu
A Comparison Study of Predicting lncRNA-Protein Interactions via Representative Network Embedding Methods. ICIC (2) (2022)
Pengpai Li, Zhi-Ping Liu
PST-PRNA: prediction of RNA-binding sites using protein surface topography and deep learning. Bioinform. 38 (8) (2022)
Guangyi Chen, Zhi-Ping Liu
Graph attention network for link prediction of gene regulations from single-cell RNA-sequencing data. Bioinform. 38 (19) (2022)
Na Yu, Zhi-Ping Liu, Rui Gao
Predicting multiple types of MicroRNA-disease associations based on tensor factorization and label propagation. Comput. Biol. Medicine 146 (2022)
Haixia Shang, Zhi-Ping Liu
Prioritizing Type 2 Diabetes Genes by Weighted PageRank on Bilayer Heterogeneous Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (1) (2021)
Guangyi Chen, Zhi-Ping Liu
Inference of Gene Regulatory Network from Time Series Expression Data by Combining Local Geometric Similarity and Multivariate Regression. ICIC (3) (2021)
Pengpai Li, Yongmei Hu, Zhi-Ping Liu
Prediction of cardiovascular diseases by integrating multi-modal features with machine learning methods. Biomed. Signal Process. Control. 66 (2021)
Na Yu, Zhi-Ping Liu, Rui Gao
A Semi-Supervised Learning Algorithm for Predicting MiRNA-Disease Association. BIBM (2021)
Yaohua Chang, Zhi-Ping Liu
iNOA: An Improvement of Network Ontology Analysis with GO Semantic Similarity. ICBIP (2020)
Haixia Shang, Zhi-Ping Liu
Network-based prioritization of cancer genes by integrative ranks from multi-omics data. Comput. Biol. Medicine 119 (2020)
Zishuang Zhang, Zhi-Ping Liu
Identifying Cancer Biomarkers from High-Throughput RNA Sequencing Data by Machine Learning. ICIC (2) (2019)
Zhi-Ping Liu, Rui Gao
Detecting pathway biomarkers of diabetic progression with differential entropy. J. Biomed. Informatics 82 (2018)
Zhi-Ping Liu
Towards precise reconstruction of gene regulatory networks by data integration. Quant. Biol. 6 (2) (2018)
Xu Qiao, Xiaoqing Liu, Yen-Wei Chen, Zhi-Ping Liu
Multi-dimensional data representation using linear tensor coding. IET Image Process. 11 (7) (2017)
Zhi-Ping Liu, Shutang Liu, Ruitang Chen, Xiaopeng Huang, Ling-Yun Wu
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces. BMC Bioinform. 18 (1) (2017)
Guangyong Zheng, Yaochen Xu, Xiujun Zhang, Zhi-Ping Liu, Zhuo Wang, Luonan Chen, Xin-Guang Zhu
CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data. BMC Bioinform. 17 (S-17) (2016)
Zhi-Ping Liu, Hongyu Miao
Prediction of protein-RNA interactions using sequence and structure descriptors. Neurocomputing 206 (2016)
Zhi-Ping Liu, Canglin Wu, Hongyu Miao, Hulin Wu
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. Database J. Biol. Databases Curation 2015 (2015)
Xindong Zhang, Lin Gao, Zhi-Ping Liu, Luonan Chen
Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity. BMC Bioinform. 16 (2015)
Hui-Jia Li, Junhua Zhang, Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang
Identifying overlapping communities in social networks using multi-scale local information expansion. CoRR (2015)
Zhi-Ping Liu, Hulin Wu, Jian Zhu, Hongyu Miao
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection. BMC Bioinform. 15 (2014)
Xiujun Zhang, Keqin Liu, Zhi-Ping Liu, Béatrice Duval, Jean-Michel Richer, Xing-Ming Zhao, Jin-Kao Hao, Luonan Chen
NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference. Bioinform. 29 (1) (2013)
Zhenshu Wen, Zhi-Ping Liu, Zhengrong Liu, Yan Zhang, Luonan Chen
Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer. J. Am. Medical Informatics Assoc. 20 (4) (2013)
Xiaoping Liu, Zhi-Ping Liu, Xing-Ming Zhao, Luonan Chen
Identifying disease genes and module biomarkers by differential interactions. J. Am. Medical Informatics Assoc. 19 (2) (2012)
Keqin Liu, Zhi-Ping Liu, Jin-Kao Hao, Luonan Chen, Xing-Ming Zhao
Identifying dysregulated pathways in cancers from pathway interaction networks. BMC Bioinform. 13 (2012)
Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs. BMC Bioinform. 13 (S-7) (2012)
Jianghua Zhang, Jin Li, Zhi-Ping Liu
Multiple-resource and multiple-depot emergency response problem considering secondary disasters. Expert Syst. Appl. 39 (12) (2012)
Guanying Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats. BMC Syst. Biol. 6 (S-1) (2012)
Xiujun Zhang, Xing-Ming Zhao, Kun He, Le Lu, Yongwei Cao, Jingdong Liu, Jin-Kao Hao, Zhi-Ping Liu, Luonan Chen
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information. Bioinform. 28 (1) (2012)
Yang Liu, Jin Zhou, Zhi-Ping Liu, Luonan Chen, Michael K. Ng
Construction and analysis of genome-wide SNP networks. ISB (2012)
Zhi-Ping Liu, Wanwei Zhang, Katsuhisa Horimoto, Luonan Chen
A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data. ISB (2012)
Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen
Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis. ICIC (3) (2011)
Huarong Zhou, Shigeru Saito, Guanying Piao, Zhi-Ping Liu, Jiguang Wang, Katsuhisa Horimoto, Luonan Chen
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression. BMC Syst. Biol. 5 (S-1) (2011)
Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains. BMC Syst. Biol. 4 (S-2) (2010)
Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen
Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ICMLC (2010)
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Prediction of protein-RNA binding sites by a random forest method with combined features. Bioinform. 26 (13) (2010)
Zhi-Ping Liu, Yong Wang, Tieqiao Wen, Xiang-Sun Zhang, Weiming Xia, Luonan Chen
Dynamically dysfunctional protein interactions in the development of Alzheimer's disease. SMC (2009)
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
Protein cavity clustering based on community structure of pocket similarity network. Int. J. Bioinform. Res. Appl. 4 (4) (2008)
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang
Predicting gene ontology functions from protein's regional surface structures. BMC Bioinform. 8 (2007)
Xiao-Yuan Wang, Hai-hong Liu, Zhi-Ping Liu
Short-Time Traffic Flow Forecasting Based on Projection Pursuit Auto-Regression. ICICIC (1) (2006)