PST-PRNA: prediction of RNA-binding sites using protein surface topography and deep learning.
Pengpai LiZhi-Ping LiuPublished in: Bioinform. (2022)
Keyphrases
- deep learning
- binding sites
- dna binding
- protein interaction
- genome wide
- cis regulatory
- protein protein
- predicting protein
- genome sequences
- drosophila melanogaster
- sequence alignment
- gene expression
- secondary structure
- transcription factor binding sites
- transcription factors
- dna sequences
- sequence data
- high throughput
- regulatory elements
- machine learning
- unsupervised learning
- protein structure prediction
- motif discovery
- protein sequences
- drug design
- protein families
- weakly supervised
- statistical significance
- influenza virus
- biological sequences
- protein protein interactions
- mental models
- protein function
- human genome
- amino acids
- protein structure
- genomic sequences
- regulatory networks
- saccharomyces cerevisiae
- rna secondary structures
- microarray
- similarity measure
- learning algorithm
- information retrieval