Katsuhisa Horimoto

Publication Activity (10 Years)

Years Active: 1994-2022
Publications (10 Years): 2

Top Topics

High Throughput

Secondary Structure

Measurement Noise

Top Venues

Database J. Biol. Databases Curation

J. Comput. Aided Mol. Des.

Publications

Harumi Kagiwada, Chie Motono, Katsuhisa Horimoto, Kazuhiko Fukui
Phosprof: pathway analysis database of drug response based on phosphorylation activity measurements. Database J. Biol. Databases Curation 2022 (2022) (2022)
Satoshi Yamasaki, Takayuki Amemiya, Yukimitsu Yabuki, Katsuhisa Horimoto, Kazuhiko Fukui
ToGo-WF: prediction of RNA tertiary structures and RNA-RNA/protein interactions using the KNIME workflow. J. Comput. Aided Mol. Des. 33 (5) (2019)
Taejeong Bae, Kyoohyoung Rho, Jin Woo Choi, Katsuhisa Horimoto, Wan Kyu Kim, Sunghoon Kim
Identification of upstream regulators for prognostic expression signature genes in colorectal cancer. BMC Syst. Biol. 7 (2013)
Shigeru Saito, Xinrong Zhou, Taejeong Bae, Sunghoon Kim, Katsuhisa Horimoto
Identification of master regulator candidates in conjunction with network screening and inference. Int. J. Data Min. Bioinform. 8 (3) (2013)
Guanying Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats. BMC Syst. Biol. 6 (S-1) (2012)
Xinrong Zhou, Katsuhisa Horimoto, Shigeru Saito, Luonan Chen, Huarong Zhou
Network clustering along diabetes progression in three tissues of Goto-Kakizaki rats. ISB (2012)
Akiko Toshimori, Kunio Shimizu, Tingting Yu, Zhining Fan, Xinrong Zhou, Shigeru Saito, Katsuhisa Horimoto, Xia Jinrong, Huarong Zhou
Exploration of Cellular Relationships from Characteristically Expressed Genes by Partial Canonical Correlation Analysis. CISIS (2012)
Zhi-Ping Liu, Wanwei Zhang, Katsuhisa Horimoto, Luonan Chen
A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data. ISB (2012)
Katsuhisa Horimoto, Katsumi Inoue, Oliver Ray
International Symposium on Symbolic Systems Biology (NII Shonan Meeting 2011-7). NII Shonan Meet. Rep. 2011 (2011)
Shigeru Saito, Takatsugu Hirokawa, Katsuhisa Horimoto
Discovery of Chemical Compound Groups with Common Structures by a Network Analysis Approach (Affinity Prediction Method). J. Chem. Inf. Model. 51 (1) (2011)
Huarong Zhou, Shigeru Saito, Guanying Piao, Zhi-Ping Liu, Jiguang Wang, Katsuhisa Horimoto, Luonan Chen
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression. BMC Syst. Biol. 5 (S-1) (2011)
Shigeru Saito, Yasuko Onuma, Yuzuru Ito, Hiroaki Tateno, Masashi Toyoda, Akutsu Hidenori, Koichiro Nishino, Emi Chikazawa, Yoshihiro Fukawatase, Yoshitaka Miyagawa, Hajime Okita, Nobutaka Kiyokawa, Yohichi Shimma, Akihiro Umezawa, Jun Hirabayashi, Katsuhisa Horimoto, Makoto Asashima
Possible linkages between the inner and outer cellular states of human induced pluripotent stem cells. BMC Syst. Biol. 5 (S-1) (2011)
Shigeru Saito, Xinrong Zhou, Taejeong Bae, Sunghoon Kim, Katsuhisa Horimoto
A procedure for identifying master regulators in conjunction with network screening and inference. BIBM (2010)
Masahiko Nakatsui, Katsuhisa Horimoto, Masahiro Okamoto, Yasuhito Tokumoto, Jun Miyake
Parameter optimization by using differential elimination: a general approach for introducing constraints into objective functions. BMC Syst. Biol. 4 (S-2) (2010)
Masahiko Nakatsui, Katsuhisa Horimoto
Improvement of estimation accuracy in parameter optimization by symbolic computation. CACSD (2010)
Masahiko Nakatsui, Alexandre Sedoglavic, François Lemaire, François Boulier, Asli Ürgüplü, Katsuhisa Horimoto
A General Procedure for Accurate Parameter Estimation in Dynamic Systems Using New Estimation Errors. ANB (2010)
Katsuhisa Horimoto, Shigeru Saito
Co-Expressed Gene Assessment Based on the Path Consistency Algorithm: Operon Detention in Escherichia coli. SMC (2009)
Hirokazu Anai, Katsuhisa Horimoto
Foreword. Math. Comput. Sci. 2 (3) (2009)
Tatsuya Akutsu, Takeyuki Tamura, Katsuhisa Horimoto
Completing Networks Using Observed Data. ALT (2009)
Shigeru Saito, Masao Honda, Shuichi Kaneko, Katsuhisa Horimoto
Detection of network structure changes by graphical chain modeling: a case study of hepatitis C virus-related hepatocellular carcinoma. CDC (2009)
Daisuke Tominaga, Fukumi Iguchi, Katsuhisa Horimoto, Yutaka Akiyama
High-throughput Automated Image Processing System for Cell Array Observations. Inf. Media Technol. 3 (1) (2008)
Hiroshi Yoshida, Katsuhisa Horimoto, Hirokazu Anai
Inference of Probabilities over a Stochastic IL-System by Quantifier Elimination. Math. Comput. Sci. 1 (3) (2008)
Shigeru Saito, Sachiyo Aburatani, Katsuhisa Horimoto
Network evaluation from the consistency of the graph structure with the measured data. BMC Syst. Biol. 2 (2008)
Daisuke Tominaga, Katsuhisa Horimoto
Judgment Algorithm for Periodicity of Time Series Data Based on Bayesian Information Criterion. J. Bioinform. Comput. Biol. 6 (4) (2008)
Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, Katsuhisa Horimoto, Tatsuya Akutsu
Integer programming-based approach to allocation of reporter genes for cell array analysis. Int. J. Bioinform. Res. Appl. 4 (4) (2008)
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
Inference of Protein-Protein Interactions by Using Co-evolutionary Information. AB (2007)
Sachiyo Aburatani, Fuyan Sun, Shigeru Saito, Masao Honda, Shuichi Kaneko, Katsuhisa Horimoto
Gene Systems Network Inferred from Expression Profiles in Hepatocellular Carcinogenesis by Graphical Gaussian Model. EURASIP J. Bioinform. Syst. Biol. 2007 (2007)
Hiroshi Yoshida, Hirokazu Anai, Katsuhisa Horimoto
Derivation of rigorous conditions for high cell-type diversity by algebraic approach. Biosyst. 90 (2) (2007)
Hiroshi Yoshida, Koji Nakagawa, Hirokazu Anai, Katsuhisa Horimoto
An Algebraic-Numeric Algorithm for the Model Selection in Kinetic Networks. CASC (2007)
Hiroshi Yoshida, Koji Nakagawa, Hirokazu Anai, Katsuhisa Horimoto
Exact Parameter Determination for Parkinson's Disease Diagnosis with PET Using an Algebraic Approach. AB (2007)
Hirokazu Anai, Shigeo Orii, Katsuhisa Horimoto
Symbolic-numeric Estimation of Parameters in Biochemical Models by Quantifier Elimination. J. Bioinform. Comput. Biol. 4 (5) (2006)
K. C. Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu
Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms. J. Bioinform. Comput. Biol. 4 (1) (2006)
Tatsuya Akutsu, Morihiro Hayashida, Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto
Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. (5) (2006)
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinform. 22 (20) (2006)
Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu
Clique-based algorithms for protein threading with profiles and constraints. APBC (2005)
Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Hiroyuki Toh, Katsuhisa Horimoto
ASIAN: a website for network inference. Bioinform. 20 (16) (2004)
Tatsuya Akutsu, Morihiro Hayashida, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto
Protein Threading with Profiles and Constraints. BIBE (2004)
Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. Signal Process. 83 (4) (2003)
Hiroyuki Toh, Katsuhisa Horimoto
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling. Bioinform. 18 (2) (2002)
Katsuhisa Horimoto, Hiroyuki Toh
Statistical estimation of cluster boundaries in gene expression profile data. Bioinform. 17 (12) (2001)
Katsuhisa Horimoto, Satoshi Fukuchi, Kentaro Mori
Comprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes. Bioinform. 17 (9) (2001)
Katsuhisa Horimoto, Mikita Suyama, Hiroyuki Toh, Kentaro Mori, Jinya Otsuka
A method for comparing circular genomes from gene locations: application to mitochondrial genomes. Bioinform. 14 (9) (1998)
Katsuhisa Horimoto, Kunio Oshima, Akira Tsugita, Jinya Otsuka
Protein Superfamily Database (Prosup). CODATA (1994)