Satoru Kuhara

Publication Activity (10 Years)

Years Active: 1984-2014
Publications (10 Years): 0

Top Topics

Candidate Genes

High Throughput

Comparative Analysis

Top Venues

J. Bioinform. Comput. Biol.

Publications

Toshihide Ono, Satoru Kuhara
A novel method for gathering and prioritizing disease candidate genes based on construction of a set of disease-related MeSH(R) terms. BMC Bioinform. 15 (2014)
Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara
Infrequent, Unexpected, and Contrast Pattern Discovery from Bacterial Genomes by Genome-wide Comparative Analysis. BIOINFORMATICS (2013)
Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda
The Purity Measure for genomic Regions leads to Horizontally Transferred genes. J. Bioinform. Comput. Biol. 11 (6) (2013)
Haretsugu Hishigaki, Satoru Kuhara
hERGAPDbase: a database documenting hERG channel inhibitory potentials and APD-prolongation activities of chemical compounds. Database J. Biol. Databases Curation 2011 (2011)
Hirofumi Suzaki, Satoru Kuhara
An Extension Approach for Neural Networks by Introducing a Nearest Neighbor Algorithm in Relative Coordinates. J. Adv. Comput. Intell. Intell. Informatics 14 (4) (2010)
Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin G. Print, Stephen D. Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks. Pacific Symposium on Biocomputing (2009)
Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara
Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations. BIBM (2008)
Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G. Print, Stephen D. Charnock-Jones, Deborah Sanders, Christopher J. Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles. Pacific Symposium on Biocomputing (2006)
Satoshi Niijima, Satoru Kuhara
Gene subset selection in kernel-induced feature space. Pattern Recognit. Lett. 27 (16) (2006)
Satoshi Niijima, Satoru Kuhara
Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE. BMC Bioinform. 7 (2006)
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides. Int. J. Bioinform. Res. Appl. 1 (4) (2005)
Satoshi Niijima, Satoru Kuhara
Multiclass Molecular Cancer Classification by Kernel Subspace Methods with Effective Kernel Parameter Selection. J. Bioinform. Comput. Biol. 3 (5) (2005)
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides. International Conference on Computational Science (2) (2005)
Yukihiro Maki, Yoriko Takahashi, Yuji Arikawa, Shoji Watanabe, Ken Aoshima, Yukihiro Eguchi, Takanori Ueda, Sachiyo Aburatani, Satoru Kuhara, Masahiro Okamoto
. J. Bioinform. Comput. Biol. 2 (3) (2004)
Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. J. Bioinform. Comput. Biol. 2 (1) (2004)
Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. CSB (2003)
Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. J. Bioinform. Comput. Biol. 1 (2) (2003)
Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. ECCB (2003)
Seiya Imoto, Christopher J. Savoie, Sachiyo Aburatani, SunYong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Use of Gene Networks for Identifying and Validating Drug Targets. J. Bioinform. Comput. Biol. 1 (3) (2003)
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model. Theor. Comput. Sci. 298 (1) (2003)
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis. Theor. Comput. Sci. 292 (2) (2003)
Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. Signal Process. 83 (4) (2003)
Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. CSB (2002)
Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano
Fast algorithm for extracting multiple unordered short motifs using bit operations. Inf. Sci. 146 (1-4) (2002)
Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada
Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations. JCIS (2002)
Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano
Learning Conformation Rules. Discovery Science (2001)
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
Inferring qualitative relations in genetic networks and metabolic pathways. Bioinform. 16 (8) (2000)
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis. Discovery Science (2000)
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. RECOMB (2000)
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function. J. Comput. Biol. 7 (3-4) (2000)
Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara
Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs. Pacific Symposium on Biocomputing (1999)
Hideki Hirakawa, S. Muta, Satoru Kuhara
The hydrophobic cores of proteins predicted by wavelet analysis. Bioinform. 15 (2) (1999)
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model. Pacific Symposium on Biocomputing (1999)
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions. SODA (1998)
Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara
Application of a deductive database system to search for topological and similar three-dimensional structures in protein. Comput. Appl. Biosci. 13 (2) (1997)
Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi
Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. ISMB (1997)
Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara
BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences. ISMB (1995)
Akio Nishikawa, Kenji Satou, Emiko Furuichi, Satoru Kuhara, Kazuo Ushijima
Data Classification Component in a Deductive Database System and Its Application to Protein Structural Analysis. IEICE Trans. Inf. Syst. (11) (1995)
Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa
Development of an integrated Database for Genome Mapping and Nucleotide Sequences. HICSS (5) (1994)
Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi
Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins. HICSS (5) (1994)
Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara
A deductive database system PACADE for analyzing 3-D and secondary structures of protein. Comput. Appl. Biosci. 9 (3) (1993)
Setsuo Arikawa, Satoru Miyano, Ayumi Shinohara, Satoru Kuhara, Yasuhito Mukouchi, Takeshi Shinohara
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. New Gener. Comput. 11 (3) (1993)
Setsuo Arikawa, Satoru Kuhara, Satoru Miyano, Yasuhito Mukouchi, Ayumi Shinohara, Takeshi Shinohara
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. FGCS (1992)
Satoru Kuhara, Fumihiro Matsuo, Syoichi Futamura, Atsushi Fujita, Takeshi Shinohara, Toshihisa Takagi, Yoshiyuki Sakaki
GENAS: a database system for nucleic acid sequence analysis. Nucleic Acids Res. 12 (1) (1984)