Osamu Maruyama

Publication Activity (10 Years)

Years Active: 1992-2023
Publications (10 Years): 9

Top Topics

Protein Complexes

Computational Biology

Top Venues

BMC Syst. Biol.

Publications

Tsukasa Koga, Osamu Maruyama
CBOEP: Generating negative enhancer-promoter interactions to train classifiers. BCB (2023)
Osamu Maruyama, Yinuo Li, Hiroki Narita, Hidehiro Toh, Wan Kin Au Yeung, Hiroyuki Sasaki
CMIC: predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers. BMC Bioinform. 23 (1) (2022)
Wan Kin Au Yeung, Osamu Maruyama, Hiroyuki Sasaki
A convolutional neural network-based regression model to infer the epigenetic crosstalk responsible for CG methylation patterns. BMC Bioinform. 22 (1) (2021)
Osamu Maruyama, Fumiko Matsuzaki
DegSampler3: Pairwise Dependency Model in Degradation Motif Site Prediction of Substrate Protein Sequences. BIBE (2019)
Osamu Maruyama, Fumiko Matsuzaki
DegSampler: Collapsed Gibbs Sampler for Detecting E3 Binding Sites. BIBE (2018)
Takuro Maruyama, Tomotaka Murashige, Daisuke Sakota, Osamu Maruyama, Wataru Hijikata
Development of an Intelligent Ventricular Assist Device with a Function of Sensorless Thrombus Detection. EMBC (2018)
Osamu Maruyama, Yuki Kuwahara
RocSampler: regularizing overlapping protein complexes in protein-protein interaction networks. BMC Bioinform. 18 (15) (2017)
Osamu Maruyama, Yuki Kuwahara
RocSampler: Regularizing overlapping protein complexes in protein-protein interaction networks. ICCABS (2016)
Koki Kawakami, Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Yasuo Kawaguchi, Osamu Maruyama
Reaction mechanism of blood coagulation factors in shear flow field. EMBC (2016)
Tomotaka Murashige, Ryo Kosaka, Daisuke Sakota, Masahiro Nishida, Yasuo Kawaguchi, Takashi Yamane, Osamu Maruyama
Evaluation of erythrocyte flow at a bearing gap in a hydrodynamically levitated centrifugal blood pump. EMBC (2015)
Daisuke Sakota, Eiki Nagaoka, Osamu Maruyama
Hyperspectral imaging of vascular anastomosis associated with blood flow and hemoglobin concentration. EMBC (2015)
Osamu Maruyama, Limsoon Wong
Regularizing predicted complexes by mutually exclusive protein-protein interactions. ASONAM (2015)
Ryo Kosaka, Fumihiko Yoshida, Masahiro Nishida, Osamu Maruyama, Yasuo Kawaguchi, Takashi Yamane
Bearing gap adjustment for improvement of levitation performance in a hydrodynamically levitated centrifugal blood pump. EMBC (2015)
Daisuke Sakota, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama
Development of a photon-cell interactive monte carlo simulation for non-invasive measurement of blood glucose level by Raman spectroscopy. EMBC (2015)
Peiying Ruan, Morihiro Hayashida, Osamu Maruyama, Tatsuya Akutsu
Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels. BMC Bioinform. 15 (S-2) (2014)
So Kobiki, Osamu Maruyama
ReSAPP: Predicting overlapping protein complexes by merging multiple-sampled partitions of proteins. J. Bioinform. Comput. Biol. 12 (6) (2014)
Chern Han Yong, Osamu Maruyama, Limsoon Wong
Discovery of small protein complexes from PPI networks with size-specific supervised weighting. BMC Syst. Biol. 8 (S-5) (2014)
Osamu Maruyama, Shota Shikita
A scale-free structure prior for Bayesian inference of Gaussian graphical models. BIBM (2014)
Daisuke Sakota, Yuki Kani, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama
Simultaneous determination of hemolysis and hematocrit in extracorporeal circulation by plasma surface reflectance spectroscopy. EMBC (2013)
Osamu Maruyama
Heterodimeric protein complex identification by naïve Bayes classifiers. BMC Bioinform. 14 (2013)
Masahiro Nishida, Kento Nakayama, Ryo Kosaka, Osamu Maruyama, Yasuo Kawaguchi, Katsuyuki Kuwana, Takashi Yamane
Effect of impeller flow path on pump performance and impeller stability of the monopivot circulatory pump. EMBC (2013)
Ryo Kosaka, Kyohei Fukuda, Masahiro Nishida, Osamu Maruyama, Takashi Yamane
Noninvasive blood-flow meter using a curved cannula with zero compensation for an axial flow blood pump. EMBC (2013)
Tomotaka Murashige, Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane, Katsuyuki Kuwana, Yasuo Kawaguchi
Fluid dynamic design for low hemolysis in a hydrodynamically levitated centrifugal blood pump. EMBC (2013)
Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara
Infrequent, Unexpected, and Contrast Pattern Discovery from Bacterial Genomes by Genome-wide Comparative Analysis. BIOINFORMATICS (2013)
Chasanah Kusumastuti Widita, Osamu Maruyama
PPSampler2: Predicting protein complexes more accurately and efficiently by sampling. BMC Syst. Biol. 7 (S-6) (2013)
Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda
The Purity Measure for genomic Regions leads to Horizontally Transferred genes. J. Bioinform. Comput. Biol. 11 (6) (2013)
Achyut Sapkota, Yuta Asakura, Osamu Maruyama, Ryo Kosaka, Takashi Yamane, Masahiro Takei
Risk analysis and detection of thrombosis by measurement of electrical resistivity of blood. EMBC (2013)
Osamu Maruyama
Heterodimeric protein complex identification. BCB (2011)
Ryo Kosaka, Toru Yada, Masahiro Nishida, Osamu Maruyama, Takashi Yamane
Improvement of hemocompatibility for hydrodynamic levitation centrifugal pump by optimizing step bearings. EMBC (2011)
Ryo Kosaka, Masahiro Nishida, Osamu Maruyama, Takashi Yamane
Noninvasive miniaturized mass-flow meter using a curved cannula for implantable axial flow blood pump. EMBC (2011)
Osamu Maruyama, Ayaka Chihara
NWE: Node-weighted expansion for protein complex prediction using random walk distances. BIBM Workshops (2010)
Osamu Maruyama, Ayaka Chihara
NWE: Node-weighted expansion for protein complex prediction using random walk distances. BIBM (2010)
Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara
Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations. BIBM (2008)
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides. Int. J. Bioinform. Res. Appl. 1 (4) (2005)
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides. International Conference on Computational Science (2) (2005)
Hiroki Sakai, Osamu Maruyama
Extensive Search for Discriminative Features of Alternative Splicing. Pacific Symposium on Biocomputing (2004)
Daichi Shigemizu, Osamu Maruyama
Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting. WABI (2004)
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model. Theor. Comput. Sci. 298 (1) (2003)
Daisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama
Finding optimal degenerate patterns in DNA sequences. ECCB (2003)
Osamu Maruyama, Takayoshi Shoudai, Satoru Miyano
Toward Drawing an Atlas of Hypothesis Classes: Approximating a Hypothesis via Another Hypothesis Model. Discovery Science (2002)
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano
Extensive feature detection of N-terminal protein sorting signals. Bioinform. 18 (2) (2002)
Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano
Fast algorithm for extracting multiple unordered short motifs using bit operations. Inf. Sci. 146 (1-4) (2002)
Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada
Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations. JCIS (2002)
Yoshinori Tamada, Hideo Bannai, Osamu Maruyama, Satoru Miyano
Foundations of Designing Computational Knowledge Discovery Processes. Progress in Discovery Science (2002)
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano
Views: Fundamental Building Blocks in the Process of Knowledge Discovery. FLAIRS Conference (2001)
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano
VML: A View Modeling Language for Computational Knowledge Discovery. Discovery Science (2001)
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano
HypothesisCreator: Concepts for Accelerating the Computational Knowledge Discovery Process. Electron. Trans. Artif. Intell. 5 (B) (2001)
Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano
Learning Conformation Rules. Discovery Science (2001)
Osamu Maruyama, Tomoyuki Uchida, Kim Lan Sim, Satoru Miyano
Designing Views in HypothesisCreator: System for Assisting in Discovery. Discovery Science (1999)
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions. SODA (1998)
Osamu Maruyama, Tomoyuki Uchida, Takayoshi Shoudai, Satoru Miyano
Toward Genomic Hypothesis Creator: View Designer for Discovery. Discovery Science (1998)
Erika Tateishi, Osamu Maruyama, Satoru Miyano
Extracting Best Consensus Motifs from Positive and Negative Examples. STACS (1996)
Osamu Maruyama, Satoru Miyano
Inferring a Tree from Walks. Theor. Comput. Sci. 161 (1&2) (1996)
Osamu Maruyama, Satoru Miyano
Graph Inference from a Walk for TRees of Bounded Degree 3 is NP-Complete. MFCS (1995)
Osamu Maruyama, Satoru Miyano
Inferring a Tree from Walks. MFCS (1992)