Hiroyuki Toh

Publication Activity (10 Years)

Years Active: 1997-2018
Publications (10 Years): 2

Top Topics

Sequence Alignment

Protein Classification

Top Venues

Publications

Atsuko Yamaguchi, Hiroyuki Toh
Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment. JIST (2018)
Hiroyuki Oda, Motonori Ota, Hiroyuki Toh
Profile comparison revealed deviation from structural constraint at the positively selected sites. Biosyst. 147 (2016)
Teppei Ebina, Hiroyuki Toh, Yutaka Kuroda
DROP: an SVM domain linker predictor trained with optimal features selected by random forest. Bioinform. 27 (4) (2011)
Fredrik Johansson, Hiroyuki Toh
A comparative study of conservation and variation scores. BMC Bioinform. 11 (2010)
Kazutaka Katoh, Hiroyuki Toh
Parallelization of the MAFFT multiple sequence alignment program. Bioinform. 26 (15) (2010)
Fredrik Johansson, Hiroyuki Toh
Relative von Neumann Entropy for Evaluating amino acid conservation. J. Bioinform. Comput. Biol. 8 (5) (2010)
Daron M. Standley, Reiko Yamashita, Akira R. Kinjo, Hiroyuki Toh, Haruki Nakamura
: balancing sequence and structural information in protein functional mapping. Bioinform. 26 (9) (2010)
Kazutaka Katoh, Hiroyuki Toh
Recent developments in the MAFFT multiple sequence alignment program. Briefings Bioinform. 9 (4) (2008)
Kazutaka Katoh, Hiroyuki Toh
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinform. 9 (2008)
Kazutaka Katoh, Hiroyuki Toh
PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences. Bioinform. 23 (3) (2007)
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
Inference of Protein-Protein Interactions by Using Co-evolutionary Information. AB (2007)
Daron M. Standley, Hiroyuki Toh, Haruki Nakamura
ASH structure alignment package: Sensitivity and selectivity in domain classification. BMC Bioinform. 8 (2007)
Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh
Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinform. 22 (20) (2006)
Daron M. Standley, Hiroyuki Toh, Haruki Nakamura
GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures. BMC Bioinform. 6 (2005)
Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Hiroyuki Toh, Katsuhisa Horimoto
ASIAN: a web server for inferring a regulatory network framework from gene expression profiles. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinform. 21 (17) (2005)
Sachiyo Aburatani, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Hiroyuki Toh, Katsuhisa Horimoto
ASIAN: a website for network inference. Bioinform. 20 (16) (2004)
Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. Signal Process. 83 (4) (2003)
Hiroyuki Toh, Katsuhisa Horimoto
Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling. Bioinform. 18 (2) (2002)
Katsuhisa Horimoto, Hiroyuki Toh
Statistical estimation of cluster boundaries in gene expression profile data. Bioinform. 17 (12) (2001)
Katsuhisa Horimoto, Mikita Suyama, Hiroyuki Toh, Kentaro Mori, Jinya Otsuka
A method for comparing circular genomes from gene locations: application to mitochondrial genomes. Bioinform. 14 (9) (1998)
Hiroyuki Toh
Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm. Comput. Appl. Biosci. 13 (4) (1997)