PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences.
Kazutaka KatohHiroyuki TohPublished in: Bioinform. (2007)
Keyphrases
- computational complexity
- tree structure
- space complexity
- optimal solution
- computational cost
- preprocessing
- memory requirements
- dynamic programming
- worst case
- expectation maximization
- neural network
- detection algorithm
- simulated annealing
- single scan
- segmentation algorithm
- hidden markov models
- optimization algorithm
- matching algorithm
- cost function
- graph structure
- objective function
- binary tree
- learning algorithm